miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17182 5' -54.5 NC_004333.2 + 31785 0.66 0.783619
Target:  5'- --uUCGUCGAgauuCCGCaGAUcgcGUCGAGCGUc -3'
miRNA:   3'- ccuAGCAGCU----GGCG-CUA---CGGCUUGCA- -5'
17182 5' -54.5 NC_004333.2 + 38077 0.66 0.783619
Target:  5'- aGGcCGa-GAUCGUGAUGCUGAACGg -3'
miRNA:   3'- cCUaGCagCUGGCGCUACGGCUUGCa -5'
17182 5' -54.5 NC_004333.2 + 25212 0.66 0.783619
Target:  5'- cGA-CGUCGAcgcCCGCGAcgcUGCCGuuCGg -3'
miRNA:   3'- cCUaGCAGCU---GGCGCU---ACGGCuuGCa -5'
17182 5' -54.5 NC_004333.2 + 12480 0.66 0.773656
Target:  5'- cGGGUCGUCauUCGCGuccagcuUGCCGGcauACGg -3'
miRNA:   3'- -CCUAGCAGcuGGCGCu------ACGGCU---UGCa -5'
17182 5' -54.5 NC_004333.2 + 18598 0.66 0.773656
Target:  5'- cGGGUUGccgcCGGCUGCGAagGCCGcugcAGCGUc -3'
miRNA:   3'- -CCUAGCa---GCUGGCGCUa-CGGC----UUGCA- -5'
17182 5' -54.5 NC_004333.2 + 4335 0.66 0.773656
Target:  5'- ---gUGUCGACCG-GgcGCaCGAACGUg -3'
miRNA:   3'- ccuaGCAGCUGGCgCuaCG-GCUUGCA- -5'
17182 5' -54.5 NC_004333.2 + 47756 0.66 0.773656
Target:  5'- --uUCGUCGuacuUCGCcuUGCCGAGCGc -3'
miRNA:   3'- ccuAGCAGCu---GGCGcuACGGCUUGCa -5'
17182 5' -54.5 NC_004333.2 + 42627 0.66 0.763548
Target:  5'- cGGAUaa--GGCCGUGAUGCCcguuGACGg -3'
miRNA:   3'- -CCUAgcagCUGGCGCUACGGc---UUGCa -5'
17182 5' -54.5 NC_004333.2 + 28598 0.66 0.763548
Target:  5'- cGGGUCGcUCGGCUGCGAcagGCUaauccGAUGUa -3'
miRNA:   3'- -CCUAGC-AGCUGGCGCUa--CGGc----UUGCA- -5'
17182 5' -54.5 NC_004333.2 + 38218 0.66 0.763548
Target:  5'- aGAUCGgCGGCCGgguCGgcGUCGAACGc -3'
miRNA:   3'- cCUAGCaGCUGGC---GCuaCGGCUUGCa -5'
17182 5' -54.5 NC_004333.2 + 38620 0.66 0.753305
Target:  5'- -uGUCGUUG-CCGUGAgcgcGUCGGACGg -3'
miRNA:   3'- ccUAGCAGCuGGCGCUa---CGGCUUGCa -5'
17182 5' -54.5 NC_004333.2 + 24821 0.66 0.753305
Target:  5'- cGAUCGUCG-CCGCGuucgUGAGCGg -3'
miRNA:   3'- cCUAGCAGCuGGCGCuacgGCUUGCa -5'
17182 5' -54.5 NC_004333.2 + 28951 0.66 0.753305
Target:  5'- cGAgCG-CGAUCGCGcgGCaCGAGCGc -3'
miRNA:   3'- cCUaGCaGCUGGCGCuaCG-GCUUGCa -5'
17182 5' -54.5 NC_004333.2 + 22195 0.66 0.74294
Target:  5'- cGGuUCGgCGGCUGCGGccugcucgaUGCCGAgACGg -3'
miRNA:   3'- -CCuAGCaGCUGGCGCU---------ACGGCU-UGCa -5'
17182 5' -54.5 NC_004333.2 + 41785 0.66 0.732463
Target:  5'- --cUCGUUGAUCGCGccGUGCCGccCGa -3'
miRNA:   3'- ccuAGCAGCUGGCGC--UACGGCuuGCa -5'
17182 5' -54.5 NC_004333.2 + 41910 0.66 0.732463
Target:  5'- cGGAUgccCGACCGCucGcgGCCGGGCGc -3'
miRNA:   3'- -CCUAgcaGCUGGCG--CuaCGGCUUGCa -5'
17182 5' -54.5 NC_004333.2 + 29380 0.67 0.721885
Target:  5'- cGGcUCGUCGcCCGCGAaGCaaacGGCGUa -3'
miRNA:   3'- -CCuAGCAGCuGGCGCUaCGgc--UUGCA- -5'
17182 5' -54.5 NC_004333.2 + 33021 0.67 0.721885
Target:  5'- gGGAUCGgcgUCGAUCGCuuuGAgcGCCGcACGUg -3'
miRNA:   3'- -CCUAGC---AGCUGGCG---CUa-CGGCuUGCA- -5'
17182 5' -54.5 NC_004333.2 + 5339 0.67 0.71122
Target:  5'- uGGAUCGUCacGCCGCcgugGAUGcCCGGAUu- -3'
miRNA:   3'- -CCUAGCAGc-UGGCG----CUAC-GGCUUGca -5'
17182 5' -54.5 NC_004333.2 + 20066 0.67 0.700476
Target:  5'- cGAUUG-CGGCCGacuUGCCGAACa- -3'
miRNA:   3'- cCUAGCaGCUGGCgcuACGGCUUGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.