miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17182 5' -54.5 NC_004333.2 + 23475 0.67 0.700476
Target:  5'- -uGUUGUCGGCCGCGcugauccaguUGCCGAGg-- -3'
miRNA:   3'- ccUAGCAGCUGGCGCu---------ACGGCUUgca -5'
17182 5' -54.5 NC_004333.2 + 19701 0.67 0.689667
Target:  5'- cGGccagCGUCGGCCGCGcucGCCGcGCu- -3'
miRNA:   3'- -CCua--GCAGCUGGCGCua-CGGCuUGca -5'
17182 5' -54.5 NC_004333.2 + 23508 0.67 0.689667
Target:  5'- cGAUaCGUCGACCGauccgGCCGGcgGCGg -3'
miRNA:   3'- cCUA-GCAGCUGGCgcua-CGGCU--UGCa -5'
17182 5' -54.5 NC_004333.2 + 13927 0.67 0.678803
Target:  5'- cGAUCGU-GGCCGC--UGCCGccAGCGUg -3'
miRNA:   3'- cCUAGCAgCUGGCGcuACGGC--UUGCA- -5'
17182 5' -54.5 NC_004333.2 + 12665 0.67 0.678803
Target:  5'- uGAUCGacgggUCGACCGC---GCCGAACa- -3'
miRNA:   3'- cCUAGC-----AGCUGGCGcuaCGGCUUGca -5'
17182 5' -54.5 NC_004333.2 + 38081 0.67 0.678803
Target:  5'- cGGGUCGgCGcACUG-GAaGCCGAGCGa -3'
miRNA:   3'- -CCUAGCaGC-UGGCgCUaCGGCUUGCa -5'
17182 5' -54.5 NC_004333.2 + 26472 0.67 0.678803
Target:  5'- uGGAUCGUCGugaaugugcgUCGCG-UGCCGcACGc -3'
miRNA:   3'- -CCUAGCAGCu---------GGCGCuACGGCuUGCa -5'
17182 5' -54.5 NC_004333.2 + 28767 0.68 0.667894
Target:  5'- ---gCGUCGACCGCGcggGUCGcGGCGg -3'
miRNA:   3'- ccuaGCAGCUGGCGCua-CGGC-UUGCa -5'
17182 5' -54.5 NC_004333.2 + 36914 0.68 0.645987
Target:  5'- uGGGUUGauagCGGCCgGCGAUGgCCGuAGCGc -3'
miRNA:   3'- -CCUAGCa---GCUGG-CGCUAC-GGC-UUGCa -5'
17182 5' -54.5 NC_004333.2 + 18381 0.68 0.645987
Target:  5'- aGGAUCGUgCGcACgCGCG-UGCCG-GCGa -3'
miRNA:   3'- -CCUAGCA-GC-UG-GCGCuACGGCuUGCa -5'
17182 5' -54.5 NC_004333.2 + 6694 0.68 0.641597
Target:  5'- cGAUCGaguugauuaccugCGACUGCGgcGCUGGGCGg -3'
miRNA:   3'- cCUAGCa------------GCUGGCGCuaCGGCUUGCa -5'
17182 5' -54.5 NC_004333.2 + 7985 0.68 0.63501
Target:  5'- -cGUCGUCGGCUcuGCGGUGauGAACGc -3'
miRNA:   3'- ccUAGCAGCUGG--CGCUACggCUUGCa -5'
17182 5' -54.5 NC_004333.2 + 25363 0.69 0.602101
Target:  5'- ---gCGUCGGCCcgguuGCGAcGCCGAACa- -3'
miRNA:   3'- ccuaGCAGCUGG-----CGCUaCGGCUUGca -5'
17182 5' -54.5 NC_004333.2 + 41641 0.69 0.59117
Target:  5'- aGAUUGUCGGgCGCGGgcugcgGCCGuACGc -3'
miRNA:   3'- cCUAGCAGCUgGCGCUa-----CGGCuUGCa -5'
17182 5' -54.5 NC_004333.2 + 2093 0.69 0.558617
Target:  5'- uGAUCGaugCGGCCGUGAcGUCGGGCa- -3'
miRNA:   3'- cCUAGCa--GCUGGCGCUaCGGCUUGca -5'
17182 5' -54.5 NC_004333.2 + 9352 0.69 0.558617
Target:  5'- -cGUCGUCGGCgCGCGgcGUCGGGCc- -3'
miRNA:   3'- ccUAGCAGCUG-GCGCuaCGGCUUGca -5'
17182 5' -54.5 NC_004333.2 + 37239 0.69 0.55754
Target:  5'- cGGcgUGUCG-CCGCgcugcggGAUGCCGcACGUg -3'
miRNA:   3'- -CCuaGCAGCuGGCG-------CUACGGCuUGCA- -5'
17182 5' -54.5 NC_004333.2 + 10003 0.7 0.547872
Target:  5'- cGGGUUGUCGGCCGUc-UGCgCGA-CGUg -3'
miRNA:   3'- -CCUAGCAGCUGGCGcuACG-GCUuGCA- -5'
17182 5' -54.5 NC_004333.2 + 32199 0.7 0.537194
Target:  5'- aGGA-CGaCGAgCGCGAUgagcacgucGCCGAGCGUc -3'
miRNA:   3'- -CCUaGCaGCUgGCGCUA---------CGGCUUGCA- -5'
17182 5' -54.5 NC_004333.2 + 6721 0.7 0.526589
Target:  5'- cGAgcgCGcCGAgCGCGcUGCCGAGCGc -3'
miRNA:   3'- cCUa--GCaGCUgGCGCuACGGCUUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.