miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17182 5' -54.5 NC_004333.2 + 30372 1.09 0.00122
Target:  5'- cGGAUCGUCGACCGCGAUGCCGAACGUc -3'
miRNA:   3'- -CCUAGCAGCUGGCGCUACGGCUUGCA- -5'
17182 5' -54.5 NC_004333.2 + 23475 0.67 0.700476
Target:  5'- -uGUUGUCGGCCGCGcugauccaguUGCCGAGg-- -3'
miRNA:   3'- ccUAGCAGCUGGCGCu---------ACGGCUUgca -5'
17182 5' -54.5 NC_004333.2 + 5339 0.67 0.71122
Target:  5'- uGGAUCGUCacGCCGCcgugGAUGcCCGGAUu- -3'
miRNA:   3'- -CCUAGCAGc-UGGCG----CUAC-GGCUUGca -5'
17182 5' -54.5 NC_004333.2 + 38077 0.66 0.783619
Target:  5'- aGGcCGa-GAUCGUGAUGCUGAACGg -3'
miRNA:   3'- cCUaGCagCUGGCGCUACGGCUUGCa -5'
17182 5' -54.5 NC_004333.2 + 25472 0.73 0.345649
Target:  5'- gGGAUCGUCG-CgGCGAcaGCCGGguuGCGUg -3'
miRNA:   3'- -CCUAGCAGCuGgCGCUa-CGGCU---UGCA- -5'
17182 5' -54.5 NC_004333.2 + 24559 0.72 0.407061
Target:  5'- cGAUCGUCGGCUGCugaucGAUGCCcauCGUg -3'
miRNA:   3'- cCUAGCAGCUGGCG-----CUACGGcuuGCA- -5'
17182 5' -54.5 NC_004333.2 + 45594 0.71 0.495274
Target:  5'- cGGUCGcgaGAUCGUGAUGCCGGuCGg -3'
miRNA:   3'- cCUAGCag-CUGGCGCUACGGCUuGCa -5'
17182 5' -54.5 NC_004333.2 + 32199 0.7 0.537194
Target:  5'- aGGA-CGaCGAgCGCGAUgagcacgucGCCGAGCGUc -3'
miRNA:   3'- -CCUaGCaGCUgGCGCUA---------CGGCUUGCA- -5'
17182 5' -54.5 NC_004333.2 + 41641 0.69 0.59117
Target:  5'- aGAUUGUCGGgCGCGGgcugcgGCCGuACGc -3'
miRNA:   3'- cCUAGCAGCUgGCGCUa-----CGGCuUGCa -5'
17182 5' -54.5 NC_004333.2 + 26472 0.67 0.678803
Target:  5'- uGGAUCGUCGugaaugugcgUCGCG-UGCCGcACGc -3'
miRNA:   3'- -CCUAGCAGCu---------GGCGCuACGGCuUGCa -5'
17182 5' -54.5 NC_004333.2 + 28767 0.68 0.667894
Target:  5'- ---gCGUCGACCGCGcggGUCGcGGCGg -3'
miRNA:   3'- ccuaGCAGCUGGCGCua-CGGC-UUGCa -5'
17182 5' -54.5 NC_004333.2 + 9352 0.69 0.558617
Target:  5'- -cGUCGUCGGCgCGCGgcGUCGGGCc- -3'
miRNA:   3'- ccUAGCAGCUG-GCGCuaCGGCUUGca -5'
17182 5' -54.5 NC_004333.2 + 2754 0.76 0.237414
Target:  5'- aGAUCG-CGGCCGCcGUGCCGGucGCGUu -3'
miRNA:   3'- cCUAGCaGCUGGCGcUACGGCU--UGCA- -5'
17182 5' -54.5 NC_004333.2 + 13927 0.67 0.678803
Target:  5'- cGAUCGU-GGCCGC--UGCCGccAGCGUg -3'
miRNA:   3'- cCUAGCAgCUGGCGcuACGGC--UUGCA- -5'
17182 5' -54.5 NC_004333.2 + 15461 0.75 0.291172
Target:  5'- gGGGUCGaUCGGCgCGCuuggcGUGCCGAGCGc -3'
miRNA:   3'- -CCUAGC-AGCUG-GCGc----UACGGCUUGCa -5'
17182 5' -54.5 NC_004333.2 + 10003 0.7 0.547872
Target:  5'- cGGGUUGUCGGCCGUc-UGCgCGA-CGUg -3'
miRNA:   3'- -CCUAGCAGCUGGCGcuACG-GCUuGCA- -5'
17182 5' -54.5 NC_004333.2 + 12665 0.67 0.678803
Target:  5'- uGAUCGacgggUCGACCGC---GCCGAACa- -3'
miRNA:   3'- cCUAGC-----AGCUGGCGcuaCGGCUUGca -5'
17182 5' -54.5 NC_004333.2 + 20066 0.67 0.700476
Target:  5'- cGAUUG-CGGCCGacuUGCCGAACa- -3'
miRNA:   3'- cCUAGCaGCUGGCgcuACGGCUUGca -5'
17182 5' -54.5 NC_004333.2 + 32791 0.73 0.345649
Target:  5'- -cAUUG-CGACCGgGAUGUCGAGCGg -3'
miRNA:   3'- ccUAGCaGCUGGCgCUACGGCUUGCa -5'
17182 5' -54.5 NC_004333.2 + 32279 0.71 0.445088
Target:  5'- cGGAUggcgcggGUCGGCgGCGAUGUCGAcguGCGUc -3'
miRNA:   3'- -CCUAg------CAGCUGgCGCUACGGCU---UGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.