miRNA display CGI


Results 1 - 20 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17183 3' -53.3 NC_004333.2 + 5317 0.66 0.823099
Target:  5'- cACGuUCGACCcggccgGCUucaUCGCCGAau-ACCCc -3'
miRNA:   3'- -UGU-AGCUGG------CGA---AGCGGCUcuuUGGG- -5'
17183 3' -53.3 NC_004333.2 + 39803 0.66 0.823099
Target:  5'- cCAUCGAgCaGuCUUUGCCGAGcuuGCCg -3'
miRNA:   3'- uGUAGCUgG-C-GAAGCGGCUCuu-UGGg -5'
17183 3' -53.3 NC_004333.2 + 14110 0.66 0.823099
Target:  5'- cCGUCGA-CGCUaUCGUCGu--GGCCCg -3'
miRNA:   3'- uGUAGCUgGCGA-AGCGGCucuUUGGG- -5'
17183 3' -53.3 NC_004333.2 + 29917 0.66 0.823099
Target:  5'- gGCAuccUCGGCCGCUUUGCCau--GGCUUc -3'
miRNA:   3'- -UGU---AGCUGGCGAAGCGGcucuUUGGG- -5'
17183 3' -53.3 NC_004333.2 + 31480 0.66 0.813694
Target:  5'- -uGUCGAUCGCUUUGUCGGcGuuCUCg -3'
miRNA:   3'- ugUAGCUGGCGAAGCGGCUcUuuGGG- -5'
17183 3' -53.3 NC_004333.2 + 7422 0.66 0.813694
Target:  5'- --uUCGACgCGCggCGCCcagagcugcacGAGAcGGCCCg -3'
miRNA:   3'- uguAGCUG-GCGaaGCGG-----------CUCU-UUGGG- -5'
17183 3' -53.3 NC_004333.2 + 9781 0.66 0.813694
Target:  5'- gGCGuuUCGcgaACCGCgugCGCCGAauccAACCCu -3'
miRNA:   3'- -UGU--AGC---UGGCGaa-GCGGCUcu--UUGGG- -5'
17183 3' -53.3 NC_004333.2 + 32358 0.66 0.813694
Target:  5'- cACGUCGACa---UCGCCGcc-GACCCg -3'
miRNA:   3'- -UGUAGCUGgcgaAGCGGCucuUUGGG- -5'
17183 3' -53.3 NC_004333.2 + 18853 0.66 0.804093
Target:  5'- cGCAguugcCGugCGCaacgcauugcCGCCGGGgcGCCCa -3'
miRNA:   3'- -UGUa----GCugGCGaa--------GCGGCUCuuUGGG- -5'
17183 3' -53.3 NC_004333.2 + 30077 0.66 0.804093
Target:  5'- -gGUCGauGCCGUagCGCCGAcGGAACgCg -3'
miRNA:   3'- ugUAGC--UGGCGaaGCGGCU-CUUUGgG- -5'
17183 3' -53.3 NC_004333.2 + 33027 0.66 0.804093
Target:  5'- gGCGUCGAUCGCUUugagCGCCGcacgugcguagcGGucGGCCa -3'
miRNA:   3'- -UGUAGCUGGCGAA----GCGGC------------UCu-UUGGg -5'
17183 3' -53.3 NC_004333.2 + 27532 0.66 0.804093
Target:  5'- -uGUCGAUCGCaagugccgCGCCGGGGcgAAUCUg -3'
miRNA:   3'- ugUAGCUGGCGaa------GCGGCUCU--UUGGG- -5'
17183 3' -53.3 NC_004333.2 + 47606 0.66 0.801176
Target:  5'- --uUCaGCUGCgcgUCGCCGAGAugggcggcacguucGAUCCg -3'
miRNA:   3'- uguAGcUGGCGa--AGCGGCUCU--------------UUGGG- -5'
17183 3' -53.3 NC_004333.2 + 23827 0.66 0.794306
Target:  5'- cGCAgaaCGACuCGUcgcgCGUCGAGcuGCCCg -3'
miRNA:   3'- -UGUa--GCUG-GCGaa--GCGGCUCuuUGGG- -5'
17183 3' -53.3 NC_004333.2 + 22482 0.66 0.794306
Target:  5'- -gAUCgGugCGCgcaugCGCCGcGAAGCCUc -3'
miRNA:   3'- ugUAG-CugGCGaa---GCGGCuCUUUGGG- -5'
17183 3' -53.3 NC_004333.2 + 23173 0.66 0.794306
Target:  5'- cACGUCGgucggugcGCCGUUUUGCgGAaucguGAuACCCg -3'
miRNA:   3'- -UGUAGC--------UGGCGAAGCGgCU-----CUuUGGG- -5'
17183 3' -53.3 NC_004333.2 + 37959 0.66 0.788349
Target:  5'- gACAUCGGCCGCgucaCGgUGGcGAAcauucuccaagcacuGCCCg -3'
miRNA:   3'- -UGUAGCUGGCGaa--GCgGCU-CUU---------------UGGG- -5'
17183 3' -53.3 NC_004333.2 + 31296 0.66 0.784345
Target:  5'- cGCG-CGGCCGUcgCGCCGGcauGACCa -3'
miRNA:   3'- -UGUaGCUGGCGaaGCGGCUcu-UUGGg -5'
17183 3' -53.3 NC_004333.2 + 37778 0.66 0.78334
Target:  5'- gACAUCGagcaggccauugaGCCGCcacgCGCCGGGccGGCCg -3'
miRNA:   3'- -UGUAGC-------------UGGCGaa--GCGGCUCu-UUGGg -5'
17183 3' -53.3 NC_004333.2 + 10996 0.67 0.763946
Target:  5'- cACGUUaaGCCGCUUC-CCGGuAGGCCCc -3'
miRNA:   3'- -UGUAGc-UGGCGAAGcGGCUcUUUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.