miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17183 5' -58 NC_004333.2 + 25856 0.66 0.563937
Target:  5'- --cGGUCGaugcgaaucUGCAGCAGCGCuuggugcGCGAGc -3'
miRNA:   3'- gguCCAGC---------ACGUCGUCGCGc------CGUUCc -5'
17183 5' -58 NC_004333.2 + 14752 0.66 0.563937
Target:  5'- uCCGGGUCGUu---CAGCGCGGgGAa- -3'
miRNA:   3'- -GGUCCAGCAcgucGUCGCGCCgUUcc -5'
17183 5' -58 NC_004333.2 + 45297 0.66 0.562868
Target:  5'- aCAGGUCG-GCaccgacaAGCA-CGUGGCcGGGc -3'
miRNA:   3'- gGUCCAGCaCG-------UCGUcGCGCCGuUCC- -5'
17183 5' -58 NC_004333.2 + 11898 0.66 0.557529
Target:  5'- aCCuuGUCGUcgcggcccggcaugcGCAGCGGCGCGcGCGc-- -3'
miRNA:   3'- -GGucCAGCA---------------CGUCGUCGCGC-CGUucc -5'
17183 5' -58 NC_004333.2 + 31016 0.66 0.553268
Target:  5'- gUAGGUgCGcugcagcugcUGCAGCAuGUGCGGCAc-- -3'
miRNA:   3'- gGUCCA-GC----------ACGUCGU-CGCGCCGUucc -5'
17183 5' -58 NC_004333.2 + 24919 0.66 0.553268
Target:  5'- gCGGuUCGUGCGGCcGCcGaCGGuCGAGGu -3'
miRNA:   3'- gGUCcAGCACGUCGuCG-C-GCC-GUUCC- -5'
17183 5' -58 NC_004333.2 + 41646 0.66 0.553268
Target:  5'- gUCGGGcgCGgGCuGCGGCcguacgcCGGCAAGGa -3'
miRNA:   3'- -GGUCCa-GCaCGuCGUCGc------GCCGUUCC- -5'
17183 5' -58 NC_004333.2 + 31229 0.66 0.553268
Target:  5'- gCC-GGUCGcGaCGGCcGCGCGGCGc-- -3'
miRNA:   3'- -GGuCCAGCaC-GUCGuCGCGCCGUucc -5'
17183 5' -58 NC_004333.2 + 18583 0.66 0.54266
Target:  5'- aCCcGuUCGUGCAacaaacgacCGGCGCGGCAGGc -3'
miRNA:   3'- -GGuCcAGCACGUc--------GUCGCGCCGUUCc -5'
17183 5' -58 NC_004333.2 + 7555 0.66 0.54266
Target:  5'- cUCAGGUCGgacaugGCGGUcG-GCGGCAgacccaugcgcAGGa -3'
miRNA:   3'- -GGUCCAGCa-----CGUCGuCgCGCCGU-----------UCC- -5'
17183 5' -58 NC_004333.2 + 3313 0.66 0.54266
Target:  5'- aCCAGaUCGUGCAGaugcuGCcCGGCGucaucGGGg -3'
miRNA:   3'- -GGUCcAGCACGUCgu---CGcGCCGU-----UCC- -5'
17183 5' -58 NC_004333.2 + 42087 0.66 0.53107
Target:  5'- aUAGcGUCGUGCuGCgcgacgaGGCGUGucGCGAGGu -3'
miRNA:   3'- gGUC-CAGCACGuCG-------UCGCGC--CGUUCC- -5'
17183 5' -58 NC_004333.2 + 22057 0.66 0.521654
Target:  5'- aCAGaUCGUGCA-CGGCGCGuaGCGccAGGa -3'
miRNA:   3'- gGUCcAGCACGUcGUCGCGC--CGU--UCC- -5'
17183 5' -58 NC_004333.2 + 11203 0.66 0.521654
Target:  5'- uUCGGGuUCGUGCu---GCcCGGCGAGGc -3'
miRNA:   3'- -GGUCC-AGCACGucguCGcGCCGUUCC- -5'
17183 5' -58 NC_004333.2 + 22169 0.66 0.521654
Target:  5'- uCCuuGUCGccgGCGGCGGC-CGGCGGcGGu -3'
miRNA:   3'- -GGucCAGCa--CGUCGUCGcGCCGUU-CC- -5'
17183 5' -58 NC_004333.2 + 39778 0.66 0.511269
Target:  5'- gCCgAGGUCGcuUGUcgucAGUGGCGCaGGCAGGc -3'
miRNA:   3'- -GG-UCCAGC--ACG----UCGUCGCG-CCGUUCc -5'
17183 5' -58 NC_004333.2 + 13967 0.66 0.511269
Target:  5'- uUCAGG-CG-GCGGcCGGUGCGcGCGAGc -3'
miRNA:   3'- -GGUCCaGCaCGUC-GUCGCGC-CGUUCc -5'
17183 5' -58 NC_004333.2 + 38322 0.67 0.483679
Target:  5'- uUCAGGgCGUGCAucacguugacgaaCGGCGCGGCGcgcuugcucgacucGGGg -3'
miRNA:   3'- -GGUCCaGCACGUc------------GUCGCGCCGU--------------UCC- -5'
17183 5' -58 NC_004333.2 + 46074 0.67 0.470652
Target:  5'- gCAGGcCGUGcCAGCccucGGCGCcgaguGGCAGGc -3'
miRNA:   3'- gGUCCaGCAC-GUCG----UCGCG-----CCGUUCc -5'
17183 5' -58 NC_004333.2 + 20825 0.67 0.470652
Target:  5'- uUCAGG-CGcGCAGCcGCGuCGGCGAu- -3'
miRNA:   3'- -GGUCCaGCaCGUCGuCGC-GCCGUUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.