miRNA display CGI


Results 1 - 20 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17183 5' -58 NC_004333.2 + 1857 0.72 0.230549
Target:  5'- gCCGGuGUCGUGCGGUucugacGCGCcuggcccggauuGGCGGGGu -3'
miRNA:   3'- -GGUC-CAGCACGUCGu-----CGCG------------CCGUUCC- -5'
17183 5' -58 NC_004333.2 + 2411 0.68 0.413003
Target:  5'- gCCuGGUCGccguacagcgGCAGCgugccuugguacGGCGCGGCGAa- -3'
miRNA:   3'- -GGuCCAGCa---------CGUCG------------UCGCGCCGUUcc -5'
17183 5' -58 NC_004333.2 + 3313 0.66 0.54266
Target:  5'- aCCAGaUCGUGCAGaugcuGCcCGGCGucaucGGGg -3'
miRNA:   3'- -GGUCcAGCACGUCgu---CGcGCCGU-----UCC- -5'
17183 5' -58 NC_004333.2 + 3917 0.73 0.202339
Target:  5'- gCCAGG-CG-GCAGCGGCGgcaggccgacCGGCAGGu -3'
miRNA:   3'- -GGUCCaGCaCGUCGUCGC----------GCCGUUCc -5'
17183 5' -58 NC_004333.2 + 4943 0.68 0.394775
Target:  5'- aCAuGGUCa-GCGGCGGCaGCGGCAucGGc -3'
miRNA:   3'- gGU-CCAGcaCGUCGUCG-CGCCGUu-CC- -5'
17183 5' -58 NC_004333.2 + 5612 0.75 0.154833
Target:  5'- uUCAGGcCGUGCGGCAGCuuGCaGGCAAc- -3'
miRNA:   3'- -GGUCCaGCACGUCGUCG--CG-CCGUUcc -5'
17183 5' -58 NC_004333.2 + 7508 0.75 0.163446
Target:  5'- gUCGGGccgucUCGUGCAGCucugGGCGCcgcgcgucgaaGGCAAGGa -3'
miRNA:   3'- -GGUCC-----AGCACGUCG----UCGCG-----------CCGUUCC- -5'
17183 5' -58 NC_004333.2 + 7555 0.66 0.54266
Target:  5'- cUCAGGUCGgacaugGCGGUcG-GCGGCAgacccaugcgcAGGa -3'
miRNA:   3'- -GGUCCAGCa-----CGUCGuCgCGCCGU-----------UCC- -5'
17183 5' -58 NC_004333.2 + 9104 0.72 0.248386
Target:  5'- gCAGGUCGccaaagGCAGCgAGCGCgccgccuGGCAAGc -3'
miRNA:   3'- gGUCCAGCa-----CGUCG-UCGCG-------CCGUUCc -5'
17183 5' -58 NC_004333.2 + 9544 0.72 0.249022
Target:  5'- gCAGcUCG-GCGGCGGUGCGGCAc-- -3'
miRNA:   3'- gGUCcAGCaCGUCGUCGCGCCGUucc -5'
17183 5' -58 NC_004333.2 + 11203 0.66 0.521654
Target:  5'- uUCGGGuUCGUGCu---GCcCGGCGAGGc -3'
miRNA:   3'- -GGUCC-AGCACGucguCGcGCCGUUCC- -5'
17183 5' -58 NC_004333.2 + 11317 0.71 0.296865
Target:  5'- -uGGGcCGUcugGCAGCacucgAGCGcCGGCAAGGa -3'
miRNA:   3'- ggUCCaGCA---CGUCG-----UCGC-GCCGUUCC- -5'
17183 5' -58 NC_004333.2 + 11898 0.66 0.557529
Target:  5'- aCCuuGUCGUcgcggcccggcaugcGCAGCGGCGCGcGCGc-- -3'
miRNA:   3'- -GGucCAGCA---------------CGUCGUCGCGC-CGUucc -5'
17183 5' -58 NC_004333.2 + 13967 0.66 0.511269
Target:  5'- uUCAGG-CG-GCGGcCGGUGCGcGCGAGc -3'
miRNA:   3'- -GGUCCaGCaCGUC-GUCGCGC-CGUUCc -5'
17183 5' -58 NC_004333.2 + 14380 0.67 0.469657
Target:  5'- uUCAGGUCG-GCAauuGCcuGCGCGGUcgccaugAAGGc -3'
miRNA:   3'- -GGUCCAGCaCGU---CGu-CGCGCCG-------UUCC- -5'
17183 5' -58 NC_004333.2 + 14752 0.66 0.563937
Target:  5'- uCCGGGUCGUu---CAGCGCGGgGAa- -3'
miRNA:   3'- -GGUCCAGCAcgucGUCGCGCCgUUcc -5'
17183 5' -58 NC_004333.2 + 17567 0.71 0.296865
Target:  5'- gCAGGUCgGUGCggucgagugcgAGCAGCGUGaGCGcGGc -3'
miRNA:   3'- gGUCCAG-CACG-----------UCGUCGCGC-CGUuCC- -5'
17183 5' -58 NC_004333.2 + 17631 0.7 0.335221
Target:  5'- aUCAGGUCGUcGU-GCAGCGCuuCGGGGa -3'
miRNA:   3'- -GGUCCAGCA-CGuCGUCGCGccGUUCC- -5'
17183 5' -58 NC_004333.2 + 17744 0.7 0.311026
Target:  5'- uCCAGGUgGUGCgcaAGCAuucagccggcgccGCGCGGUAAu- -3'
miRNA:   3'- -GGUCCAgCACG---UCGU-------------CGCGCCGUUcc -5'
17183 5' -58 NC_004333.2 + 18128 0.71 0.282505
Target:  5'- -gAGGUCGgacugcGCAGCAGCG-GGCAGc- -3'
miRNA:   3'- ggUCCAGCa-----CGUCGUCGCgCCGUUcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.