miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17184 5' -52.4 NC_004333.2 + 13059 0.66 0.863407
Target:  5'- aCGUCGAUUuGUcGAuGCGCGcCGAGCu -3'
miRNA:   3'- -GUAGCUGAcCAaCU-UGCGCaGCUCGc -5'
17184 5' -52.4 NC_004333.2 + 30625 0.66 0.86174
Target:  5'- -uUCGGCUGGcagacgaucgcGAAgGCGcUCGAGUGg -3'
miRNA:   3'- guAGCUGACCaa---------CUUgCGC-AGCUCGC- -5'
17184 5' -52.4 NC_004333.2 + 41741 0.66 0.854973
Target:  5'- gAUCGGCgcGGgcGAcucGCGCGcCGGGCu -3'
miRNA:   3'- gUAGCUGa-CCaaCU---UGCGCaGCUCGc -5'
17184 5' -52.4 NC_004333.2 + 30093 0.66 0.828247
Target:  5'- --cCGACg----GAACGCGUCGAuGCGc -3'
miRNA:   3'- guaGCUGaccaaCUUGCGCAGCU-CGC- -5'
17184 5' -52.4 NC_004333.2 + 23821 0.67 0.809339
Target:  5'- --aCGACUcGUc--GCGCGUCGAGCu -3'
miRNA:   3'- guaGCUGAcCAacuUGCGCAGCUCGc -5'
17184 5' -52.4 NC_004333.2 + 7200 0.67 0.793649
Target:  5'- cUAUCGACcGGUUGAACGCcuugcacgacgauuuGguUCGAcGCGa -3'
miRNA:   3'- -GUAGCUGaCCAACUUGCG---------------C--AGCU-CGC- -5'
17184 5' -52.4 NC_004333.2 + 45641 0.67 0.789655
Target:  5'- ---gGGCUGGUcGAGCGCcaUGAGCa -3'
miRNA:   3'- guagCUGACCAaCUUGCGcaGCUCGc -5'
17184 5' -52.4 NC_004333.2 + 37202 0.67 0.77955
Target:  5'- gCGUCGuGC-GGcgUGAGCGCuUCGAGCa -3'
miRNA:   3'- -GUAGC-UGaCCa-ACUUGCGcAGCUCGc -5'
17184 5' -52.4 NC_004333.2 + 26583 0.69 0.705034
Target:  5'- gAUCGugUcGUUGAACGUgGUCGGcGCGu -3'
miRNA:   3'- gUAGCugAcCAACUUGCG-CAGCU-CGC- -5'
17184 5' -52.4 NC_004333.2 + 13350 0.69 0.705034
Target:  5'- -uUCGGCacGGUguacGGGCGCGgcaCGAGCGg -3'
miRNA:   3'- guAGCUGa-CCAa---CUUGCGCa--GCUCGC- -5'
17184 5' -52.4 NC_004333.2 + 28200 0.69 0.682893
Target:  5'- uGUCaGGCUccuGGUUGucuuGCGCGUcCGGGCGc -3'
miRNA:   3'- gUAG-CUGA---CCAACu---UGCGCA-GCUCGC- -5'
17184 5' -52.4 NC_004333.2 + 1613 0.69 0.67174
Target:  5'- -uUCGACcgcauccgGGUcGAAUGCGUCGucGGCGg -3'
miRNA:   3'- guAGCUGa-------CCAaCUUGCGCAGC--UCGC- -5'
17184 5' -52.4 NC_004333.2 + 15140 0.69 0.670623
Target:  5'- gAUCGACUuggcgucGGUUGAguuGCgGCGagCGAGCGg -3'
miRNA:   3'- gUAGCUGA-------CCAACU---UG-CGCa-GCUCGC- -5'
17184 5' -52.4 NC_004333.2 + 37409 0.69 0.658307
Target:  5'- cCAgggCGACgcagauucGAGCGCGUCGAGCa -3'
miRNA:   3'- -GUa--GCUGaccaa---CUUGCGCAGCUCGc -5'
17184 5' -52.4 NC_004333.2 + 40305 0.7 0.64933
Target:  5'- uCGUCGAUcGGUUGGccggcCGCGUCGcGCa -3'
miRNA:   3'- -GUAGCUGaCCAACUu----GCGCAGCuCGc -5'
17184 5' -52.4 NC_004333.2 + 13841 0.7 0.638094
Target:  5'- -uUCGACgacGGgcGc-CGCGUCGAGCGc -3'
miRNA:   3'- guAGCUGa--CCaaCuuGCGCAGCUCGC- -5'
17184 5' -52.4 NC_004333.2 + 28085 0.72 0.505578
Target:  5'- --gCGAuCUGGUUcauCGUGUCGAGCGg -3'
miRNA:   3'- guaGCU-GACCAAcuuGCGCAGCUCGC- -5'
17184 5' -52.4 NC_004333.2 + 19925 0.72 0.494986
Target:  5'- uCAUCGACgac--GAGCGCGcCGGGCGg -3'
miRNA:   3'- -GUAGCUGaccaaCUUGCGCaGCUCGC- -5'
17184 5' -52.4 NC_004333.2 + 21788 0.73 0.475145
Target:  5'- gCGUCGagcuGCUGGcgcacgugcgcauaGAGCGCGUCGAGCu -3'
miRNA:   3'- -GUAGC----UGACCaa------------CUUGCGCAGCUCGc -5'
17184 5' -52.4 NC_004333.2 + 12862 0.74 0.386234
Target:  5'- --cCGACcGGcUUGAACGCaUCGAGCGa -3'
miRNA:   3'- guaGCUGaCC-AACUUGCGcAGCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.