miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17185 5' -55 NC_004333.2 + 45834 0.65 0.722381
Target:  5'- --uGACCuguucugGUCGGugcUGCUCGAUGuCGAUCg -3'
miRNA:   3'- uauCUGG-------CAGCU---GCGAGCUGC-GCUAG- -5'
17185 5' -55 NC_004333.2 + 41130 0.66 0.716996
Target:  5'- -aAGGCCGUuccgcucacgcagugCGGucUGUUCGACGCGAa- -3'
miRNA:   3'- uaUCUGGCA---------------GCU--GCGAGCUGCGCUag -5'
17185 5' -55 NC_004333.2 + 21988 0.66 0.712672
Target:  5'- -cGGGCCGUUuucuuUGCgUCGGCGCGaAUCa -3'
miRNA:   3'- uaUCUGGCAGcu---GCG-AGCUGCGC-UAG- -5'
17185 5' -55 NC_004333.2 + 6815 0.66 0.712672
Target:  5'- --cGACCGg-GGCGC-CGugGCGcUCg -3'
miRNA:   3'- uauCUGGCagCUGCGaGCugCGCuAG- -5'
17185 5' -55 NC_004333.2 + 21687 0.66 0.712672
Target:  5'- --uGACgGcCGAgcaGCUCGACGCGcUCu -3'
miRNA:   3'- uauCUGgCaGCUg--CGAGCUGCGCuAG- -5'
17185 5' -55 NC_004333.2 + 12973 0.66 0.712672
Target:  5'- ---uACgGUUGAUcaGCUCGGCGCGcAUCg -3'
miRNA:   3'- uaucUGgCAGCUG--CGAGCUGCGC-UAG- -5'
17185 5' -55 NC_004333.2 + 33114 0.66 0.712672
Target:  5'- --cGACCGcuacgcacgugCGGCGCUCaaaGCGAUCg -3'
miRNA:   3'- uauCUGGCa----------GCUGCGAGcugCGCUAG- -5'
17185 5' -55 NC_004333.2 + 37406 0.66 0.701809
Target:  5'- -----aCGUCGGCGCUCGcgguuuGCGCGGc- -3'
miRNA:   3'- uaucugGCAGCUGCGAGC------UGCGCUag -5'
17185 5' -55 NC_004333.2 + 9056 0.66 0.695256
Target:  5'- --cGACaCGUCGACGC-CGAucugcgugagcgccuCGCGGUa -3'
miRNA:   3'- uauCUG-GCAGCUGCGaGCU---------------GCGCUAg -5'
17185 5' -55 NC_004333.2 + 8139 0.66 0.690875
Target:  5'- -gAGcCCGUCGACGacaggUGugGCGAc- -3'
miRNA:   3'- uaUCuGGCAGCUGCga---GCugCGCUag -5'
17185 5' -55 NC_004333.2 + 2040 0.66 0.679885
Target:  5'- --cGAUcaCGUCGACGCcCG-CGCGAUa -3'
miRNA:   3'- uauCUG--GCAGCUGCGaGCuGCGCUAg -5'
17185 5' -55 NC_004333.2 + 45006 0.66 0.679885
Target:  5'- gAUAGcuGCCGacuucuUCGGCGCgcgCGACGC-AUCg -3'
miRNA:   3'- -UAUC--UGGC------AGCUGCGa--GCUGCGcUAG- -5'
17185 5' -55 NC_004333.2 + 30060 0.66 0.679885
Target:  5'- cAUGGugC-UCG-CGCUCGGCGcCGGUg -3'
miRNA:   3'- -UAUCugGcAGCuGCGAGCUGC-GCUAg -5'
17185 5' -55 NC_004333.2 + 23045 0.66 0.679885
Target:  5'- --cGACCGguaccgCGACGCUgcCGGCgGCGAa- -3'
miRNA:   3'- uauCUGGCa-----GCUGCGA--GCUG-CGCUag -5'
17185 5' -55 NC_004333.2 + 19565 0.66 0.678783
Target:  5'- ---cACgGUCGGCGCggcacaaggggaaUCGcGCGCGAUCa -3'
miRNA:   3'- uaucUGgCAGCUGCG-------------AGC-UGCGCUAG- -5'
17185 5' -55 NC_004333.2 + 28809 0.67 0.657776
Target:  5'- uAUAGugCGUCcACG-UCGAC-CGAUCg -3'
miRNA:   3'- -UAUCugGCAGcUGCgAGCUGcGCUAG- -5'
17185 5' -55 NC_004333.2 + 31017 0.67 0.64668
Target:  5'- --cGGCCGcCGGCGUaUCGccggACGUGAUCg -3'
miRNA:   3'- uauCUGGCaGCUGCG-AGC----UGCGCUAG- -5'
17185 5' -55 NC_004333.2 + 10693 0.67 0.64668
Target:  5'- uAUGcACuCGguUCGACGCuguUCGACGCGAUUg -3'
miRNA:   3'- -UAUcUG-GC--AGCUGCG---AGCUGCGCUAG- -5'
17185 5' -55 NC_004333.2 + 45216 0.67 0.63557
Target:  5'- -cGGGCCGacuucgggCGACGacagguaGGCGCGAUCg -3'
miRNA:   3'- uaUCUGGCa-------GCUGCgag----CUGCGCUAG- -5'
17185 5' -55 NC_004333.2 + 8917 0.67 0.63557
Target:  5'- -----gCGUCGAUGCgCGACGCGGcuUCg -3'
miRNA:   3'- uaucugGCAGCUGCGaGCUGCGCU--AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.