miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17185 5' -55 NC_004333.2 + 31695 1.08 0.001197
Target:  5'- gAUAGACCGUCGACGCUCGACGCGAUCu -3'
miRNA:   3'- -UAUCUGGCAGCUGCGAGCUGCGCUAG- -5'
17185 5' -55 NC_004333.2 + 44808 0.67 0.613351
Target:  5'- aAUAcGCCG-CGACGCUCGGCGagGAc- -3'
miRNA:   3'- -UAUcUGGCaGCUGCGAGCUGCg-CUag -5'
17185 5' -55 NC_004333.2 + 29815 0.67 0.624457
Target:  5'- -cGGGCCGUUGAUGCugaUCGcCGCGccgccaGUCg -3'
miRNA:   3'- uaUCUGGCAGCUGCG---AGCuGCGC------UAG- -5'
17185 5' -55 NC_004333.2 + 45834 0.65 0.722381
Target:  5'- --uGACCuguucugGUCGGugcUGCUCGAUGuCGAUCg -3'
miRNA:   3'- uauCUGG-------CAGCU---GCGAGCUGC-GCUAG- -5'
17185 5' -55 NC_004333.2 + 15008 0.71 0.395808
Target:  5'- -cGGGCCGcCGACGC-CGACGCc--- -3'
miRNA:   3'- uaUCUGGCaGCUGCGaGCUGCGcuag -5'
17185 5' -55 NC_004333.2 + 29877 0.71 0.414474
Target:  5'- gGUAG-UCGUCGGCGaagCGcuGCGCGAUCg -3'
miRNA:   3'- -UAUCuGGCAGCUGCga-GC--UGCGCUAG- -5'
17185 5' -55 NC_004333.2 + 14108 0.7 0.433672
Target:  5'- ---uGCCGUCGACGCuaucgUCGugGCccguGAUCg -3'
miRNA:   3'- uaucUGGCAGCUGCG-----AGCugCG----CUAG- -5'
17185 5' -55 NC_004333.2 + 10214 0.7 0.473557
Target:  5'- --cGGCCGUCGGCaucaaaGCUgCG-CGCGGUCu -3'
miRNA:   3'- uauCUGGCAGCUG------CGA-GCuGCGCUAG- -5'
17185 5' -55 NC_004333.2 + 8979 0.69 0.504644
Target:  5'- cGUGGGCCGUgcgCGGCgGCgacCGACGCGGcguUCg -3'
miRNA:   3'- -UAUCUGGCA---GCUG-CGa--GCUGCGCU---AG- -5'
17185 5' -55 NC_004333.2 + 17374 0.67 0.610022
Target:  5'- uGUGGGaggaCGUCGAgcagcgcaucgagcUGCUCGcgcaGCGCGGUCa -3'
miRNA:   3'- -UAUCUg---GCAGCU--------------GCGAGC----UGCGCUAG- -5'
17185 5' -55 NC_004333.2 + 39262 0.69 0.504644
Target:  5'- --cGGCCGgcaGGCGCacgCGcGCGCGAUCg -3'
miRNA:   3'- uauCUGGCag-CUGCGa--GC-UGCGCUAG- -5'
17185 5' -55 NC_004333.2 + 13903 0.69 0.49418
Target:  5'- -cGGGCUGcgCGGCgGCUgcCGugGCGAUCg -3'
miRNA:   3'- uaUCUGGCa-GCUG-CGA--GCugCGCUAG- -5'
17185 5' -55 NC_004333.2 + 8708 0.75 0.247093
Target:  5'- --cGACCGUgaCGcCGCUCGAgucCGCGAUCa -3'
miRNA:   3'- uauCUGGCA--GCuGCGAGCU---GCGCUAG- -5'
17185 5' -55 NC_004333.2 + 25671 0.68 0.591198
Target:  5'- --cGGCCGUCGcgaACGCggCGACcUGAUCa -3'
miRNA:   3'- uauCUGGCAGC---UGCGa-GCUGcGCUAG- -5'
17185 5' -55 NC_004333.2 + 5543 0.72 0.343172
Target:  5'- --uGGCCGgCGACgGCUUGGCGCGAg- -3'
miRNA:   3'- uauCUGGCaGCUG-CGAGCUGCGCUag -5'
17185 5' -55 NC_004333.2 + 28861 0.7 0.473557
Target:  5'- cGUAG-CCGgcgCGcucaaGCGCUCGugccGCGCGAUCg -3'
miRNA:   3'- -UAUCuGGCa--GC-----UGCGAGC----UGCGCUAG- -5'
17185 5' -55 NC_004333.2 + 19738 0.68 0.602262
Target:  5'- -aAGACgG-CGcCGCUgccgucaaCGACGCGAUCg -3'
miRNA:   3'- uaUCUGgCaGCuGCGA--------GCUGCGCUAG- -5'
17185 5' -55 NC_004333.2 + 8637 0.67 0.624457
Target:  5'- --cGA-CGUCGA-GCUCGGCGCGGc- -3'
miRNA:   3'- uauCUgGCAGCUgCGAGCUGCGCUag -5'
17185 5' -55 NC_004333.2 + 30226 0.72 0.360144
Target:  5'- --uGAUCGaUCGACGCgccgCG-CGCGAUCa -3'
miRNA:   3'- uauCUGGC-AGCUGCGa---GCuGCGCUAG- -5'
17185 5' -55 NC_004333.2 + 25843 0.7 0.433672
Target:  5'- -gGGGCgCGUCaGGCGgUCGAUGCGAa- -3'
miRNA:   3'- uaUCUG-GCAG-CUGCgAGCUGCGCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.