miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17186 3' -56.6 NC_004333.2 + 47450 0.66 0.60479
Target:  5'- gGUCGGCGCuUUCGuuucaucgGGCGGCGuGUUg -3'
miRNA:   3'- gCAGCCGCGcAAGUca------CUGCCGU-CAA- -5'
17186 3' -56.6 NC_004333.2 + 7714 0.66 0.582792
Target:  5'- -aUCGGCGCGgaCAGcGACGGaucGUUg -3'
miRNA:   3'- gcAGCCGCGCaaGUCaCUGCCgu-CAA- -5'
17186 3' -56.6 NC_004333.2 + 18563 0.67 0.550126
Target:  5'- cCGUCGGCGUGc-CGGcaACGGCGGg- -3'
miRNA:   3'- -GCAGCCGCGCaaGUCacUGCCGUCaa -5'
17186 3' -56.6 NC_004333.2 + 27161 0.67 0.513822
Target:  5'- uGUCGGCGCGcgaucagccaugCGugcccccgagguGUGGCGGCAGa- -3'
miRNA:   3'- gCAGCCGCGCaa----------GU------------CACUGCCGUCaa -5'
17186 3' -56.6 NC_004333.2 + 22872 0.67 0.507515
Target:  5'- gCGaUCGGCGCGaUCGuacuggcgcucGUGACGaGCAGa- -3'
miRNA:   3'- -GC-AGCCGCGCaAGU-----------CACUGC-CGUCaa -5'
17186 3' -56.6 NC_004333.2 + 17564 0.67 0.504373
Target:  5'- gGUCGGUGCGgUCgAGUGcgagcagcgugagcGCGGCGGc- -3'
miRNA:   3'- gCAGCCGCGCaAG-UCAC--------------UGCCGUCaa -5'
17186 3' -56.6 NC_004333.2 + 47968 0.68 0.466367
Target:  5'- uCGUCGGCGUcaucggCGGUGuGCGGCuGUg -3'
miRNA:   3'- -GCAGCCGCGcaa---GUCAC-UGCCGuCAa -5'
17186 3' -56.6 NC_004333.2 + 47558 0.68 0.456349
Target:  5'- gGcCGGCGCcucGUUCAGc-GCGGCAGUc -3'
miRNA:   3'- gCaGCCGCG---CAAGUCacUGCCGUCAa -5'
17186 3' -56.6 NC_004333.2 + 10040 0.69 0.417486
Target:  5'- aCGUCGGCG-GUUCGGUacacaACGuGCGGUUc -3'
miRNA:   3'- -GCAGCCGCgCAAGUCAc----UGC-CGUCAA- -5'
17186 3' -56.6 NC_004333.2 + 8167 0.7 0.363149
Target:  5'- gGUCGGcCGCGUccaucgcguacUCAGUGAgCGGCGu-- -3'
miRNA:   3'- gCAGCC-GCGCA-----------AGUCACU-GCCGUcaa -5'
17186 3' -56.6 NC_004333.2 + 26601 0.75 0.181107
Target:  5'- gGUCGGCGCGUUCacgacaaAGcUGGCGGC-GUUg -3'
miRNA:   3'- gCAGCCGCGCAAG-------UC-ACUGCCGuCAA- -5'
17186 3' -56.6 NC_004333.2 + 32097 1.05 0.001209
Target:  5'- gCGUCGGCGCGUUCAGUGACGGCAGUUc -3'
miRNA:   3'- -GCAGCCGCGCAAGUCACUGCCGUCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.