miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17186 5' -55.6 NC_004333.2 + 2364 0.66 0.668538
Target:  5'- ---cGUGCCGGcCACGguacaCGAcuuGCGaCGGCa -3'
miRNA:   3'- uauuCGCGGUC-GUGCa----GCU---UGC-GCCG- -5'
17186 5' -55.6 NC_004333.2 + 18940 0.66 0.668538
Target:  5'- cUGGGCGCCccggcGGCaauGCGUUGcGCaCGGCa -3'
miRNA:   3'- uAUUCGCGG-----UCG---UGCAGCuUGcGCCG- -5'
17186 5' -55.6 NC_004333.2 + 24267 0.66 0.668538
Target:  5'- -cAGGCgGCCGGUAcCGUCGcauucGCGCuGCa -3'
miRNA:   3'- uaUUCG-CGGUCGU-GCAGCu----UGCGcCG- -5'
17186 5' -55.6 NC_004333.2 + 38429 0.66 0.668538
Target:  5'- -cGAGaCGCUuGcCGCGUCGAAcuuugucgaucCGUGGCg -3'
miRNA:   3'- uaUUC-GCGGuC-GUGCAGCUU-----------GCGCCG- -5'
17186 5' -55.6 NC_004333.2 + 37132 0.66 0.668538
Target:  5'- -gAAGCGCuCAcgccGCACGacgCGAucacgUGCGGCa -3'
miRNA:   3'- uaUUCGCG-GU----CGUGCa--GCUu----GCGCCG- -5'
17186 5' -55.6 NC_004333.2 + 28846 0.66 0.668538
Target:  5'- ---cGUGCCGGCuGCGuUCGuAGC-CGGCg -3'
miRNA:   3'- uauuCGCGGUCG-UGC-AGC-UUGcGCCG- -5'
17186 5' -55.6 NC_004333.2 + 18411 0.66 0.667427
Target:  5'- -gAAGCGCaacgccucgcgauCGGCgGCGUCGAcacCGCGaGCg -3'
miRNA:   3'- uaUUCGCG-------------GUCG-UGCAGCUu--GCGC-CG- -5'
17186 5' -55.6 NC_004333.2 + 48123 0.66 0.661869
Target:  5'- ---cGCGCCGGCAUggugaccgucgaaugGUUGAACGaacguaugugaGGCg -3'
miRNA:   3'- uauuCGCGGUCGUG---------------CAGCUUGCg----------CCG- -5'
17186 5' -55.6 NC_004333.2 + 7938 0.66 0.661869
Target:  5'- ---cGCGCCGcugucGC-CGUCGGacgaguagucgccauACGUGGCa -3'
miRNA:   3'- uauuCGCGGU-----CGuGCAGCU---------------UGCGCCG- -5'
17186 5' -55.6 NC_004333.2 + 3554 0.66 0.661869
Target:  5'- --cGGUGCCgcgcAGCGCGUCGGccgaccacauagugcGCcacaucGCGGCg -3'
miRNA:   3'- uauUCGCGG----UCGUGCAGCU---------------UG------CGCCG- -5'
17186 5' -55.6 NC_004333.2 + 35493 0.66 0.661869
Target:  5'- gGUGAGCGUgccgccugcgagCGGCACGUaaagugCGAAuuggcuguugagcugUGCGGCg -3'
miRNA:   3'- -UAUUCGCG------------GUCGUGCA------GCUU---------------GCGCCG- -5'
17186 5' -55.6 NC_004333.2 + 6746 0.66 0.657417
Target:  5'- -cGAGCGCCacGGCGCccCGGuCGCGcGCc -3'
miRNA:   3'- uaUUCGCGG--UCGUGcaGCUuGCGC-CG- -5'
17186 5' -55.6 NC_004333.2 + 22002 0.66 0.657417
Target:  5'- ---uGCGUCGGCGCGaaUCaGcGCGCGGg -3'
miRNA:   3'- uauuCGCGGUCGUGC--AG-CuUGCGCCg -5'
17186 5' -55.6 NC_004333.2 + 29981 0.66 0.657417
Target:  5'- -aAAGCgGCCgAGgAUGcCGcGCGCGGCc -3'
miRNA:   3'- uaUUCG-CGG-UCgUGCaGCuUGCGCCG- -5'
17186 5' -55.6 NC_004333.2 + 10867 0.66 0.657417
Target:  5'- uUGA-CGCC-GCGCGggaaGAACGcCGGCg -3'
miRNA:   3'- uAUUcGCGGuCGUGCag--CUUGC-GCCG- -5'
17186 5' -55.6 NC_004333.2 + 48093 0.66 0.657417
Target:  5'- -gAGGCGCaggCGGCAac-CGGGCGCGcGCa -3'
miRNA:   3'- uaUUCGCG---GUCGUgcaGCUUGCGC-CG- -5'
17186 5' -55.6 NC_004333.2 + 2672 0.66 0.646273
Target:  5'- ----aCGCCGGCagcuugcaGCGUCGcGCcgGCGGCg -3'
miRNA:   3'- uauucGCGGUCG--------UGCAGCuUG--CGCCG- -5'
17186 5' -55.6 NC_004333.2 + 37406 0.66 0.646273
Target:  5'- ----aCGUCGGCGCucgCGGuuuGCGCGGCg -3'
miRNA:   3'- uauucGCGGUCGUGca-GCU---UGCGCCG- -5'
17186 5' -55.6 NC_004333.2 + 25626 0.66 0.646273
Target:  5'- -cGAGuUGCCcuuGCgGCGUCGucAGCGCGGUc -3'
miRNA:   3'- uaUUC-GCGGu--CG-UGCAGC--UUGCGCCG- -5'
17186 5' -55.6 NC_004333.2 + 29488 0.66 0.646273
Target:  5'- -aGGGCaGCCAGCGcCG-CGAcgGCGaaCGGCg -3'
miRNA:   3'- uaUUCG-CGGUCGU-GCaGCU--UGC--GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.