miRNA display CGI


Results 21 - 40 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17186 5' -55.6 NC_004333.2 + 22880 0.66 0.642927
Target:  5'- -cGAGCGaCAGCGCGaCGAacACcugguacgcaacguGCGGCg -3'
miRNA:   3'- uaUUCGCgGUCGUGCaGCU--UG--------------CGCCG- -5'
17186 5' -55.6 NC_004333.2 + 8906 0.66 0.635115
Target:  5'- --uGGCGa-GGUugGCGUCGAugcgcgACGCGGCu -3'
miRNA:   3'- uauUCGCggUCG--UGCAGCU------UGCGCCG- -5'
17186 5' -55.6 NC_004333.2 + 30906 0.66 0.635115
Target:  5'- ---cGCGUCgAGCGCGUCG-ACGCuuGCc -3'
miRNA:   3'- uauuCGCGG-UCGUGCAGCuUGCGc-CG- -5'
17186 5' -55.6 NC_004333.2 + 19775 0.66 0.635115
Target:  5'- --cAGCGCCgAGCACG-CGAGCaGCa-- -3'
miRNA:   3'- uauUCGCGG-UCGUGCaGCUUG-CGccg -5'
17186 5' -55.6 NC_004333.2 + 44671 0.66 0.635115
Target:  5'- --cGGCaUCGGCacagACGUCGAA-GCGGCa -3'
miRNA:   3'- uauUCGcGGUCG----UGCAGCUUgCGCCG- -5'
17186 5' -55.6 NC_004333.2 + 45525 0.66 0.635115
Target:  5'- -gGGGCGCCccGCAU-UCGAGCgGUGGUg -3'
miRNA:   3'- uaUUCGCGGu-CGUGcAGCUUG-CGCCG- -5'
17186 5' -55.6 NC_004333.2 + 9077 0.66 0.631767
Target:  5'- cGUGAGCGCCucgcGGUAaaucuggcuugcgcUGUCGAGCGCa-- -3'
miRNA:   3'- -UAUUCGCGG----UCGU--------------GCAGCUUGCGccg -5'
17186 5' -55.6 NC_004333.2 + 47472 0.66 0.623955
Target:  5'- ---cGCGCCGGCggcgacugccGCGcUGAACGaGGCg -3'
miRNA:   3'- uauuCGCGGUCG----------UGCaGCUUGCgCCG- -5'
17186 5' -55.6 NC_004333.2 + 19825 0.66 0.623955
Target:  5'- -gGAGCgGCCGaucGCGuCGUUGAcgGCaGCGGCg -3'
miRNA:   3'- uaUUCG-CGGU---CGU-GCAGCU--UG-CGCCG- -5'
17186 5' -55.6 NC_004333.2 + 5900 0.66 0.623955
Target:  5'- --cGGCGCUucauuGGCAUGgaaaaGGACGCGGa -3'
miRNA:   3'- uauUCGCGG-----UCGUGCag---CUUGCGCCg -5'
17186 5' -55.6 NC_004333.2 + 4636 0.66 0.622839
Target:  5'- uUGAGCGCCAuCGCGaucauggCGAcgggcaggccggcGCGCGGg -3'
miRNA:   3'- uAUUCGCGGUcGUGCa------GCU-------------UGCGCCg -5'
17186 5' -55.6 NC_004333.2 + 37465 0.66 0.620607
Target:  5'- -cGAGCGCCgacguaggacgaugAGgACGgccgCGcGACGCGGUg -3'
miRNA:   3'- uaUUCGCGG--------------UCgUGCa---GC-UUGCGCCG- -5'
17186 5' -55.6 NC_004333.2 + 13350 0.66 0.612802
Target:  5'- ------uUCGGCACGguguaCGGGCGCGGCa -3'
miRNA:   3'- uauucgcGGUCGUGCa----GCUUGCGCCG- -5'
17186 5' -55.6 NC_004333.2 + 8627 0.66 0.612802
Target:  5'- -----aGCCGaugcGCgACGUCGAgcucgGCGCGGCg -3'
miRNA:   3'- uauucgCGGU----CG-UGCAGCU-----UGCGCCG- -5'
17186 5' -55.6 NC_004333.2 + 17354 0.66 0.612802
Target:  5'- ---uGCGCCGGCcggcguucACGUCGAAgGCa-- -3'
miRNA:   3'- uauuCGCGGUCG--------UGCAGCUUgCGccg -5'
17186 5' -55.6 NC_004333.2 + 31525 0.66 0.608344
Target:  5'- -cGAGCGucacgaCCAGUuCGUCGAcgauguuugcguuCGCGGCg -3'
miRNA:   3'- uaUUCGC------GGUCGuGCAGCUu------------GCGCCG- -5'
17186 5' -55.6 NC_004333.2 + 21509 0.67 0.606117
Target:  5'- --uGGCGugauuucacugucgaCgGGCGCGUCGAACGCGu- -3'
miRNA:   3'- uauUCGC---------------GgUCGUGCAGCUUGCGCcg -5'
17186 5' -55.6 NC_004333.2 + 5679 0.67 0.601665
Target:  5'- -cAAGCuGCC-GCACGgccUGAACGUGcGCa -3'
miRNA:   3'- uaUUCG-CGGuCGUGCa--GCUUGCGC-CG- -5'
17186 5' -55.6 NC_004333.2 + 46345 0.67 0.601665
Target:  5'- -cGGGCGCCGuuauGCGCcgcugCGGauuugGCGCGGCc -3'
miRNA:   3'- uaUUCGCGGU----CGUGca---GCU-----UGCGCCG- -5'
17186 5' -55.6 NC_004333.2 + 20979 0.67 0.601665
Target:  5'- --cGGCGCgGGCgaguggguGCGuuUCGAGCGCguGGCa -3'
miRNA:   3'- uauUCGCGgUCG--------UGC--AGCUUGCG--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.