miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17187 3' -59.4 NC_004333.2 + 2814 0.66 0.424626
Target:  5'- gGCGGCcGCGAUcucGGCUGuGaCGGGCAcGAAc -3'
miRNA:   3'- -UGCCGuCGCUA---UCGGC-C-GCUCGU-CUU- -5'
17187 3' -59.4 NC_004333.2 + 40979 0.66 0.424626
Target:  5'- uUGGUgcauGCGAUcuuucaugcgcaAGCCGGCGcAGUAGAu -3'
miRNA:   3'- uGCCGu---CGCUA------------UCGGCCGC-UCGUCUu -5'
17187 3' -59.4 NC_004333.2 + 17277 0.66 0.415157
Target:  5'- aGCGGCAGUGAUcGCCcGCGAcgauaaaCAGAu -3'
miRNA:   3'- -UGCCGUCGCUAuCGGcCGCUc------GUCUu -5'
17187 3' -59.4 NC_004333.2 + 6651 0.66 0.415157
Target:  5'- uCGGCAGCGc--GCuCGGCgcgcucGAGCAGGc -3'
miRNA:   3'- uGCCGUCGCuauCG-GCCG------CUCGUCUu -5'
17187 3' -59.4 NC_004333.2 + 15174 0.66 0.414217
Target:  5'- aGCGGCAGUGcguaggucgcGUucgcaauccgcacGGCCGGC-AGCAGGc -3'
miRNA:   3'- -UGCCGUCGC----------UA-------------UCGGCCGcUCGUCUu -5'
17187 3' -59.4 NC_004333.2 + 6662 0.66 0.405819
Target:  5'- -gGGCGGCGcgccGUGG-CGGCGAuGCGGGc -3'
miRNA:   3'- ugCCGUCGC----UAUCgGCCGCU-CGUCUu -5'
17187 3' -59.4 NC_004333.2 + 26435 0.66 0.402121
Target:  5'- gACGGCAGCGAcgucaucaacguGCgUGGCGAGCu--- -3'
miRNA:   3'- -UGCCGUCGCUau----------CG-GCCGCUCGucuu -5'
17187 3' -59.4 NC_004333.2 + 25412 0.66 0.396614
Target:  5'- cGCGccuGCAGCGu--GCCGGCG-GCGGc- -3'
miRNA:   3'- -UGC---CGUCGCuauCGGCCGCuCGUCuu -5'
17187 3' -59.4 NC_004333.2 + 2426 0.67 0.378614
Target:  5'- aGCGGCAGCGugccuUGGUaCGGCGcGGC-GAAc -3'
miRNA:   3'- -UGCCGUCGCu----AUCG-GCCGC-UCGuCUU- -5'
17187 3' -59.4 NC_004333.2 + 22974 0.67 0.369821
Target:  5'- cCGGCAGCGucgcgGUA-CCGGUcgccgaGAGCAGGAa -3'
miRNA:   3'- uGCCGUCGC-----UAUcGGCCG------CUCGUCUU- -5'
17187 3' -59.4 NC_004333.2 + 2090 0.67 0.369821
Target:  5'- uACGGCAGCGAguuGUacGCGAGCAu-- -3'
miRNA:   3'- -UGCCGUCGCUau-CGgcCGCUCGUcuu -5'
17187 3' -59.4 NC_004333.2 + 28850 0.67 0.352659
Target:  5'- cCGGCuGCGuucGUAGCCGGCGcGCu--- -3'
miRNA:   3'- uGCCGuCGC---UAUCGGCCGCuCGucuu -5'
17187 3' -59.4 NC_004333.2 + 35740 0.67 0.352659
Target:  5'- cCGGCGGCGu--GCCauaGCaGAGCAGAu -3'
miRNA:   3'- uGCCGUCGCuauCGGc--CG-CUCGUCUu -5'
17187 3' -59.4 NC_004333.2 + 44267 0.67 0.352659
Target:  5'- uCGGCAGuCGAcuGCCgGGCaGGCGGAAc -3'
miRNA:   3'- uGCCGUC-GCUauCGG-CCGcUCGUCUU- -5'
17187 3' -59.4 NC_004333.2 + 31738 0.67 0.352659
Target:  5'- cACGGCGgauGCGA-AGuCCGGCccgaucGAGCAGAu -3'
miRNA:   3'- -UGCCGU---CGCUaUC-GGCCG------CUCGUCUu -5'
17187 3' -59.4 NC_004333.2 + 26078 0.67 0.336069
Target:  5'- aGCGGCGGCGcuu-CCGGauuCGGGCAGGc -3'
miRNA:   3'- -UGCCGUCGCuaucGGCC---GCUCGUCUu -5'
17187 3' -59.4 NC_004333.2 + 12467 0.68 0.32799
Target:  5'- -aGGCGGCGAcacUGGCgCGcCGGGCGGGg -3'
miRNA:   3'- ugCCGUCGCU---AUCG-GCcGCUCGUCUu -5'
17187 3' -59.4 NC_004333.2 + 4653 0.68 0.320056
Target:  5'- cAUGGCGaCGGgcaGGCCGGCGcGCGGGu -3'
miRNA:   3'- -UGCCGUcGCUa--UCGGCCGCuCGUCUu -5'
17187 3' -59.4 NC_004333.2 + 20883 0.68 0.312266
Target:  5'- -gGGCGGCGAcgAGcCCGGCGcAGCGc-- -3'
miRNA:   3'- ugCCGUCGCUa-UC-GGCCGC-UCGUcuu -5'
17187 3' -59.4 NC_004333.2 + 37792 0.68 0.304621
Target:  5'- cGCGGCAGCuu--GCCGacauCGAGCAGGc -3'
miRNA:   3'- -UGCCGUCGcuauCGGCc---GCUCGUCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.