miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17187 5' -60.2 NC_004333.2 + 37752 0.66 0.437591
Target:  5'- -aCGC-GCCggGCCGGCCGacGAGCGgguCGGg -3'
miRNA:   3'- caGCGaCGG--CGGCCGGUa-UUCGC---GCC- -5'
17187 5' -60.2 NC_004333.2 + 36096 0.66 0.437591
Target:  5'- -gCGCUGCgCGCCaGCCAcgUAcgcaagguuGGCGaCGGc -3'
miRNA:   3'- caGCGACG-GCGGcCGGU--AU---------UCGC-GCC- -5'
17187 5' -60.2 NC_004333.2 + 2407 0.66 0.434754
Target:  5'- gGUCGCcugGUCGCCGuacagcggcagcguGCCuugguacGGCGCGGc -3'
miRNA:   3'- -CAGCGa--CGGCGGC--------------CGGuau----UCGCGCC- -5'
17187 5' -60.2 NC_004333.2 + 2149 0.66 0.428176
Target:  5'- cUCGCUGCCGUacaacgaggaCGGUUAcaccgggcucUAucGCGCGGg -3'
miRNA:   3'- cAGCGACGGCG----------GCCGGU----------AUu-CGCGCC- -5'
17187 5' -60.2 NC_004333.2 + 26019 0.66 0.424443
Target:  5'- -cCGCguacugGCCGCCGGCaucgacgccGCGCGc -3'
miRNA:   3'- caGCGa-----CGGCGGCCGguauu----CGCGCc -5'
17187 5' -60.2 NC_004333.2 + 25380 0.66 0.418881
Target:  5'- cGUCGCggcaGUCGCCGG-CGUcGGCcCGGu -3'
miRNA:   3'- -CAGCGa---CGGCGGCCgGUAuUCGcGCC- -5'
17187 5' -60.2 NC_004333.2 + 42009 0.66 0.418881
Target:  5'- uGUCGgUGCgcgugaagCGCgCGGCCAacGAGCGgGGc -3'
miRNA:   3'- -CAGCgACG--------GCG-GCCGGUa-UUCGCgCC- -5'
17187 5' -60.2 NC_004333.2 + 7942 0.66 0.416116
Target:  5'- -cCGCUGUCGCCGucggacgaguagucGCCAUA--CGUGGc -3'
miRNA:   3'- caGCGACGGCGGC--------------CGGUAUucGCGCC- -5'
17187 5' -60.2 NC_004333.2 + 44615 0.66 0.40971
Target:  5'- -cCGCUGCCGCCGcGCaugcAAGC-CGa -3'
miRNA:   3'- caGCGACGGCGGC-CGgua-UUCGcGCc -5'
17187 5' -60.2 NC_004333.2 + 31171 0.66 0.40971
Target:  5'- cUCGC-GCCGCUgacgGGCCA--GGCGCc- -3'
miRNA:   3'- cAGCGaCGGCGG----CCGGUauUCGCGcc -5'
17187 5' -60.2 NC_004333.2 + 31232 0.66 0.40971
Target:  5'- gGUCGCgacgGCCGCgCGGCgc--AGCGCc- -3'
miRNA:   3'- -CAGCGa---CGGCG-GCCGguauUCGCGcc -5'
17187 5' -60.2 NC_004333.2 + 20318 0.66 0.400665
Target:  5'- cGUgGUUGCCaggcuuGCCGGCCGUGc-CGaCGGg -3'
miRNA:   3'- -CAgCGACGG------CGGCCGGUAUucGC-GCC- -5'
17187 5' -60.2 NC_004333.2 + 42764 0.66 0.400665
Target:  5'- -cCGCccGCuCGUCGGCC---GGCGUGGa -3'
miRNA:   3'- caGCGa-CG-GCGGCCGGuauUCGCGCC- -5'
17187 5' -60.2 NC_004333.2 + 2715 0.66 0.400665
Target:  5'- --gGCUGauaCGCCGGC---AAGCGCGa -3'
miRNA:   3'- cagCGACg--GCGGCCGguaUUCGCGCc -5'
17187 5' -60.2 NC_004333.2 + 5048 0.66 0.400665
Target:  5'- --gGCcgGCUGuuGGCCGacgucGGCGCGGc -3'
miRNA:   3'- cagCGa-CGGCggCCGGUau---UCGCGCC- -5'
17187 5' -60.2 NC_004333.2 + 18787 0.66 0.400665
Target:  5'- aUCGCUGaaccgcgcuuaUCGCgCGGCCGcaGGGCGCGu -3'
miRNA:   3'- cAGCGAC-----------GGCG-GCCGGUa-UUCGCGCc -5'
17187 5' -60.2 NC_004333.2 + 25175 0.66 0.395299
Target:  5'- cUCGcCUGCCGCCGcGUCucgaacucgcuGCGCGa -3'
miRNA:   3'- cAGC-GACGGCGGC-CGGuauu-------CGCGCc -5'
17187 5' -60.2 NC_004333.2 + 26809 0.66 0.391748
Target:  5'- uUCGUUGCCGacggcCCGGCCugcAGCGUc- -3'
miRNA:   3'- cAGCGACGGC-----GGCCGGuauUCGCGcc -5'
17187 5' -60.2 NC_004333.2 + 35441 0.66 0.391748
Target:  5'- cUCGgUGCCGUCaGGCgGcuUGGGgGCGGc -3'
miRNA:   3'- cAGCgACGGCGG-CCGgU--AUUCgCGCC- -5'
17187 5' -60.2 NC_004333.2 + 9108 0.66 0.391748
Target:  5'- uGUCGCagGUCGCCaaaGGCagcGAGCGCGc -3'
miRNA:   3'- -CAGCGa-CGGCGG---CCGguaUUCGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.