miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17188 3' -54.2 NC_004333.2 + 10828 0.66 0.763946
Target:  5'- uUCGGUUGCgcc--GgGCCGCGCG-GUa -3'
miRNA:   3'- -AGCUAGCGaaacuCgCGGCGUGCaCG- -5'
17188 3' -54.2 NC_004333.2 + 18951 0.66 0.763946
Target:  5'- uUCGAUgCGUUcUGGGCGCCccgGCG-GCa -3'
miRNA:   3'- -AGCUA-GCGAaACUCGCGGcg-UGCaCG- -5'
17188 3' -54.2 NC_004333.2 + 36158 0.66 0.763946
Target:  5'- aCGccUCGUUgacguaGAGCGCCuGCACGaGCa -3'
miRNA:   3'- aGCu-AGCGAaa----CUCGCGG-CGUGCaCG- -5'
17188 3' -54.2 NC_004333.2 + 43964 0.66 0.757713
Target:  5'- uUUGGUCGCgcagugcgacaaggaUUUGcAGUGCCGCGagcaccggGUGCu -3'
miRNA:   3'- -AGCUAGCG---------------AAAC-UCGCGGCGUg-------CACG- -5'
17188 3' -54.2 NC_004333.2 + 6662 0.66 0.753531
Target:  5'- cUCGGcgCGCUc-GAGCaggcgcgcauccGCCGCuucACGUGCg -3'
miRNA:   3'- -AGCUa-GCGAaaCUCG------------CGGCG---UGCACG- -5'
17188 3' -54.2 NC_004333.2 + 26048 0.66 0.753531
Target:  5'- aCGGUgCGCcggaUUUGccaguGGCGCCGCAgCGgcgGCg -3'
miRNA:   3'- aGCUA-GCG----AAAC-----UCGCGGCGU-GCa--CG- -5'
17188 3' -54.2 NC_004333.2 + 12011 0.66 0.753531
Target:  5'- cUCGAcCGCcugGAGCGCgcguaauggCGCGCGcGCc -3'
miRNA:   3'- -AGCUaGCGaaaCUCGCG---------GCGUGCaCG- -5'
17188 3' -54.2 NC_004333.2 + 1249 0.66 0.752483
Target:  5'- uUCGAUCaacggcaugacguGCUccUUGGcGCGCCGCcugGCGcGCg -3'
miRNA:   3'- -AGCUAG-------------CGA--AACU-CGCGGCG---UGCaCG- -5'
17188 3' -54.2 NC_004333.2 + 31230 0.66 0.74299
Target:  5'- cCGGUCGCgac--G-GCCGCGCG-GCg -3'
miRNA:   3'- aGCUAGCGaaacuCgCGGCGUGCaCG- -5'
17188 3' -54.2 NC_004333.2 + 28522 0.66 0.74299
Target:  5'- uUCGGgagUGC-----GCGCCGaCGCGUGCa -3'
miRNA:   3'- -AGCUa--GCGaaacuCGCGGC-GUGCACG- -5'
17188 3' -54.2 NC_004333.2 + 20636 0.66 0.74299
Target:  5'- uUCGA-CGC---GAGCGUCGCAaCG-GCg -3'
miRNA:   3'- -AGCUaGCGaaaCUCGCGGCGU-GCaCG- -5'
17188 3' -54.2 NC_004333.2 + 9737 0.66 0.74299
Target:  5'- gUCGG-CGacaUGAGCGCCGgAUGcGCg -3'
miRNA:   3'- -AGCUaGCgaaACUCGCGGCgUGCaCG- -5'
17188 3' -54.2 NC_004333.2 + 24875 0.66 0.74299
Target:  5'- -aGGUCGCgc--AGCuGCCGaACGUGCc -3'
miRNA:   3'- agCUAGCGaaacUCG-CGGCgUGCACG- -5'
17188 3' -54.2 NC_004333.2 + 40105 0.66 0.74299
Target:  5'- gCGAggcguccgCGCcgUG-GCGCCGCGCGaGUu -3'
miRNA:   3'- aGCUa-------GCGaaACuCGCGGCGUGCaCG- -5'
17188 3' -54.2 NC_004333.2 + 9908 0.66 0.735541
Target:  5'- gUCGAUCGCgugaccgucccacacGAGCaggucGCCGCGCagGUGUu -3'
miRNA:   3'- -AGCUAGCGaaa------------CUCG-----CGGCGUG--CACG- -5'
17188 3' -54.2 NC_004333.2 + 47808 0.66 0.732332
Target:  5'- cUGAUCGUgcaGcGCGCCGCcuGCGgacgGCg -3'
miRNA:   3'- aGCUAGCGaaaCuCGCGGCG--UGCa---CG- -5'
17188 3' -54.2 NC_004333.2 + 47467 0.66 0.721571
Target:  5'- gCGAUUGCUUgc-GCGUCGguCG-GCg -3'
miRNA:   3'- aGCUAGCGAAacuCGCGGCguGCaCG- -5'
17188 3' -54.2 NC_004333.2 + 34244 0.66 0.721571
Target:  5'- cCGGUCGCacUUGA-CGCC-CAUGUGUc -3'
miRNA:   3'- aGCUAGCGa-AACUcGCGGcGUGCACG- -5'
17188 3' -54.2 NC_004333.2 + 2213 0.66 0.721571
Target:  5'- gCGAUCGUguagUUGuuCGCCGCguucGCGUacGCa -3'
miRNA:   3'- aGCUAGCGa---AACucGCGGCG----UGCA--CG- -5'
17188 3' -54.2 NC_004333.2 + 39861 0.66 0.721571
Target:  5'- aCGAaCcCcaUGAcgGCGCCGUACGUGCc -3'
miRNA:   3'- aGCUaGcGaaACU--CGCGGCGUGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.