miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17188 3' -54.2 NC_004333.2 + 1249 0.66 0.752483
Target:  5'- uUCGAUCaacggcaugacguGCUccUUGGcGCGCCGCcugGCGcGCg -3'
miRNA:   3'- -AGCUAG-------------CGA--AACU-CGCGGCG---UGCaCG- -5'
17188 3' -54.2 NC_004333.2 + 2213 0.66 0.721571
Target:  5'- gCGAUCGUguagUUGuuCGCCGCguucGCGUacGCa -3'
miRNA:   3'- aGCUAGCGa---AACucGCGGCG----UGCA--CG- -5'
17188 3' -54.2 NC_004333.2 + 2405 0.67 0.655499
Target:  5'- gCGGUCGCc-UGGuCGCCGUacagcggcaGCGUGCc -3'
miRNA:   3'- aGCUAGCGaaACUcGCGGCG---------UGCACG- -5'
17188 3' -54.2 NC_004333.2 + 3710 0.67 0.666633
Target:  5'- -gGAUCGUcuggUUGAGCGCCuCGCGcacccccggGCg -3'
miRNA:   3'- agCUAGCGa---AACUCGCGGcGUGCa--------CG- -5'
17188 3' -54.2 NC_004333.2 + 6662 0.66 0.753531
Target:  5'- cUCGGcgCGCUc-GAGCaggcgcgcauccGCCGCuucACGUGCg -3'
miRNA:   3'- -AGCUa-GCGAaaCUCG------------CGGCG---UGCACG- -5'
17188 3' -54.2 NC_004333.2 + 6897 0.66 0.710719
Target:  5'- aCGAgugcccCGCcg-GAGUGCCGC-CGUuGCg -3'
miRNA:   3'- aGCUa-----GCGaaaCUCGCGGCGuGCA-CG- -5'
17188 3' -54.2 NC_004333.2 + 7498 0.76 0.219754
Target:  5'- cUCGugcaGCUcUGGGCGCCGCGCGUcgaagGCa -3'
miRNA:   3'- -AGCuag-CGAaACUCGCGGCGUGCA-----CG- -5'
17188 3' -54.2 NC_004333.2 + 8202 0.72 0.392776
Target:  5'- gUCGAgaCGUUUUGAaCGCUGCGCG-GCa -3'
miRNA:   3'- -AGCUa-GCGAAACUcGCGGCGUGCaCG- -5'
17188 3' -54.2 NC_004333.2 + 8785 0.68 0.59971
Target:  5'- aUGAUCGCggacucGAGCGgCGuCACGgucgGCa -3'
miRNA:   3'- aGCUAGCGaaa---CUCGCgGC-GUGCa---CG- -5'
17188 3' -54.2 NC_004333.2 + 8937 0.69 0.566498
Target:  5'- uUCGuUCGCgcc-GGCGCUGUccaucGCGUGCg -3'
miRNA:   3'- -AGCuAGCGaaacUCGCGGCG-----UGCACG- -5'
17188 3' -54.2 NC_004333.2 + 9069 0.68 0.644344
Target:  5'- cCGAUCuGCg-UGAGCGCCuCGCG-GUa -3'
miRNA:   3'- aGCUAG-CGaaACUCGCGGcGUGCaCG- -5'
17188 3' -54.2 NC_004333.2 + 9230 0.69 0.555526
Target:  5'- aUCcAUCGCgccgaacggGGGCGCCucgcCGCGUGCg -3'
miRNA:   3'- -AGcUAGCGaaa------CUCGCGGc---GUGCACG- -5'
17188 3' -54.2 NC_004333.2 + 9737 0.66 0.74299
Target:  5'- gUCGG-CGacaUGAGCGCCGgAUGcGCg -3'
miRNA:   3'- -AGCUaGCgaaACUCGCGGCgUGCaCG- -5'
17188 3' -54.2 NC_004333.2 + 9832 0.67 0.688788
Target:  5'- cCGcGUCGCc-UGAGCGCaugacggGCACGUaGCg -3'
miRNA:   3'- aGC-UAGCGaaACUCGCGg------CGUGCA-CG- -5'
17188 3' -54.2 NC_004333.2 + 9908 0.66 0.735541
Target:  5'- gUCGAUCGCgugaccgucccacacGAGCaggucGCCGCGCagGUGUu -3'
miRNA:   3'- -AGCUAGCGaaa------------CUCG-----CGGCGUG--CACG- -5'
17188 3' -54.2 NC_004333.2 + 10287 0.67 0.677733
Target:  5'- gCGcgCaGCUUUGAuGCcgacgGCCGCaugcGCGUGCg -3'
miRNA:   3'- aGCuaG-CGAAACU-CG-----CGGCG----UGCACG- -5'
17188 3' -54.2 NC_004333.2 + 10828 0.66 0.763946
Target:  5'- uUCGGUUGCgcc--GgGCCGCGCG-GUa -3'
miRNA:   3'- -AGCUAGCGaaacuCgCGGCGUGCaCG- -5'
17188 3' -54.2 NC_004333.2 + 11943 0.67 0.666633
Target:  5'- aCGcgCGCUccaggcggucGAGCGCCuuGCACGcGCg -3'
miRNA:   3'- aGCuaGCGAaa--------CUCGCGG--CGUGCaCG- -5'
17188 3' -54.2 NC_004333.2 + 12011 0.66 0.753531
Target:  5'- cUCGAcCGCcugGAGCGCgcguaauggCGCGCGcGCc -3'
miRNA:   3'- -AGCUaGCGaaaCUCGCG---------GCGUGCaCG- -5'
17188 3' -54.2 NC_004333.2 + 13502 0.68 0.622009
Target:  5'- aUUGAUCuGCUUcagcUGGuCGCCGUccgACGUGCu -3'
miRNA:   3'- -AGCUAG-CGAA----ACUcGCGGCG---UGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.