miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17188 5' -59.6 NC_004333.2 + 468 0.66 0.450275
Target:  5'- aGGaUCGCGcgcucuacGCGCUcGGCAACUCuGUCg -3'
miRNA:   3'- gCC-GGUGCu-------CGCGA-CCGUUGAGcCAG- -5'
17188 5' -59.6 NC_004333.2 + 14973 0.66 0.450275
Target:  5'- aCGGCUugGAaaaCUGGUacGACUCGGUg -3'
miRNA:   3'- -GCCGGugCUcgcGACCG--UUGAGCCAg -5'
17188 5' -59.6 NC_004333.2 + 40861 0.66 0.450275
Target:  5'- uGGUCGCcGGCGaUGGUcgcgcGACUCGGUa -3'
miRNA:   3'- gCCGGUGcUCGCgACCG-----UUGAGCCAg -5'
17188 5' -59.6 NC_004333.2 + 29906 0.66 0.440645
Target:  5'- gGGCCGC--GCGC-GGCAucCUCGGcCg -3'
miRNA:   3'- gCCGGUGcuCGCGaCCGUu-GAGCCaG- -5'
17188 5' -59.6 NC_004333.2 + 32837 0.66 0.440645
Target:  5'- aCGuGCaaCAUGAGCGC-GGCcuGCUCGaGUCg -3'
miRNA:   3'- -GC-CG--GUGCUCGCGaCCGu-UGAGC-CAG- -5'
17188 5' -59.6 NC_004333.2 + 41824 0.66 0.440645
Target:  5'- aCGG-CACGAcgGCGCccGGCcGCgagCGGUCg -3'
miRNA:   3'- -GCCgGUGCU--CGCGa-CCGuUGa--GCCAG- -5'
17188 5' -59.6 NC_004333.2 + 37742 0.66 0.440645
Target:  5'- cCGGCCgACGAGCGggucgGGCGcgcGCUCGa-- -3'
miRNA:   3'- -GCCGG-UGCUCGCga---CCGU---UGAGCcag -5'
17188 5' -59.6 NC_004333.2 + 9705 0.66 0.440645
Target:  5'- cCGGgCGCaGGCGCgccgccGGCAGC-CGGUg -3'
miRNA:   3'- -GCCgGUGcUCGCGa-----CCGUUGaGCCAg -5'
17188 5' -59.6 NC_004333.2 + 45017 0.66 0.431132
Target:  5'- cCGGCCgcucgaccgcGCGuGGCGCUGGCGGCgCGc-- -3'
miRNA:   3'- -GCCGG----------UGC-UCGCGACCGUUGaGCcag -5'
17188 5' -59.6 NC_004333.2 + 20593 0.66 0.421741
Target:  5'- aGGCCgccaGCGAGCgGCgcGGCGGCggccggcagCGGUUg -3'
miRNA:   3'- gCCGG----UGCUCG-CGa-CCGUUGa--------GCCAG- -5'
17188 5' -59.6 NC_004333.2 + 42029 0.66 0.412474
Target:  5'- gCGGCCaACGAGCGg-GGCGuGCUCGc-- -3'
miRNA:   3'- -GCCGG-UGCUCGCgaCCGU-UGAGCcag -5'
17188 5' -59.6 NC_004333.2 + 43410 0.67 0.403335
Target:  5'- -aGCCGCccGCGCaGGCAgacGCUCgGGUCg -3'
miRNA:   3'- gcCGGUGcuCGCGaCCGU---UGAG-CCAG- -5'
17188 5' -59.6 NC_004333.2 + 24201 0.67 0.402428
Target:  5'- gCGGCCGCGAacauugcGCGCUG-CGACugUCcGUCg -3'
miRNA:   3'- -GCCGGUGCU-------CGCGACcGUUG--AGcCAG- -5'
17188 5' -59.6 NC_004333.2 + 30666 0.67 0.385445
Target:  5'- cCGGCCugGGGUuuCUcGGCGAagCGGUCg -3'
miRNA:   3'- -GCCGGugCUCGc-GA-CCGUUgaGCCAG- -5'
17188 5' -59.6 NC_004333.2 + 14689 0.67 0.380181
Target:  5'- uCGGCCgagugcagguguggcACGAGUGCgccaagcGGCAGgUCGGg- -3'
miRNA:   3'- -GCCGG---------------UGCUCGCGa------CCGUUgAGCCag -5'
17188 5' -59.6 NC_004333.2 + 19575 0.67 0.368087
Target:  5'- aCGGCCACGAGCGCcGcCAGCgCGc-- -3'
miRNA:   3'- -GCCGGUGCUCGCGaCcGUUGaGCcag -5'
17188 5' -59.6 NC_004333.2 + 44412 0.67 0.360454
Target:  5'- aCGGCCugcCGGGCucGCUGGCuggugcgugcgaggcGCUCGGcCu -3'
miRNA:   3'- -GCCGGu--GCUCG--CGACCGu--------------UGAGCCaG- -5'
17188 5' -59.6 NC_004333.2 + 45404 0.67 0.359612
Target:  5'- aGGCCGC-AGaC-CUGGC-ACUCGGUUu -3'
miRNA:   3'- gCCGGUGcUC-GcGACCGuUGAGCCAG- -5'
17188 5' -59.6 NC_004333.2 + 39278 0.68 0.351274
Target:  5'- uCGGCCGacggGAGCGCgGGCcguGCUgcCGGUg -3'
miRNA:   3'- -GCCGGUg---CUCGCGaCCGu--UGA--GCCAg -5'
17188 5' -59.6 NC_004333.2 + 30697 0.68 0.330244
Target:  5'- cCGGCgGCG-GCaacuucguccuggaaGCUGGCAaGCUCGGcCg -3'
miRNA:   3'- -GCCGgUGCuCG---------------CGACCGU-UGAGCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.