miRNA display CGI


Results 1 - 20 of 105 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17190 3' -58 NC_004333.2 + 41758 0.66 0.560125
Target:  5'- gUUGCCGccCGCGUCGAGCACga--GGa -3'
miRNA:   3'- -AACGGCcaGCGCGGCUUGUGguagCC- -5'
17190 3' -58 NC_004333.2 + 30152 0.66 0.560125
Target:  5'- -cGCCGccuuucguGUUGUacGCCGAggGCACCAagUCGGa -3'
miRNA:   3'- aaCGGC--------CAGCG--CGGCU--UGUGGU--AGCC- -5'
17190 3' -58 NC_004333.2 + 802 0.66 0.560125
Target:  5'- gUGCCGGUCGCcggcgcagGaCCGAACAgCugcacuUCGa -3'
miRNA:   3'- aACGGCCAGCG--------C-GGCUUGUgGu-----AGCc -5'
17190 3' -58 NC_004333.2 + 19905 0.66 0.560125
Target:  5'- -gGCCaucCGCGCCGuccGCAUCAUCGa -3'
miRNA:   3'- aaCGGccaGCGCGGCu--UGUGGUAGCc -5'
17190 3' -58 NC_004333.2 + 18879 0.66 0.560125
Target:  5'- -cGCCGGg-GCGCCcaGAACG-CAUCGa -3'
miRNA:   3'- aaCGGCCagCGCGG--CUUGUgGUAGCc -5'
17190 3' -58 NC_004333.2 + 47645 0.66 0.549462
Target:  5'- cUGCgGGUC-CaCCGAuuucGCACCAUCGc -3'
miRNA:   3'- aACGgCCAGcGcGGCU----UGUGGUAGCc -5'
17190 3' -58 NC_004333.2 + 27262 0.66 0.549462
Target:  5'- -aGCaCGGUC-UGCCGccACACC-UCGGg -3'
miRNA:   3'- aaCG-GCCAGcGCGGCu-UGUGGuAGCC- -5'
17190 3' -58 NC_004333.2 + 28773 0.66 0.549462
Target:  5'- aUGCCGGaagUCGUGCUGcuCGCgAUCuGGc -3'
miRNA:   3'- aACGGCC---AGCGCGGCuuGUGgUAG-CC- -5'
17190 3' -58 NC_004333.2 + 26522 0.66 0.549462
Target:  5'- -aGuCCGG-CGCGCCGAcaggugcggcgaACugCA-CGGa -3'
miRNA:   3'- aaC-GGCCaGCGCGGCU------------UGugGUaGCC- -5'
17190 3' -58 NC_004333.2 + 6813 0.66 0.543095
Target:  5'- -cGCCuGUCGCaacggcggcacuccgGCgGGGCACuCGUCGGc -3'
miRNA:   3'- aaCGGcCAGCG---------------CGgCUUGUG-GUAGCC- -5'
17190 3' -58 NC_004333.2 + 39883 0.66 0.543095
Target:  5'- -aGCCGGguaugCGCguucggacggccacaGCgCGAGCGgCGUCGGu -3'
miRNA:   3'- aaCGGCCa----GCG---------------CG-GCUUGUgGUAGCC- -5'
17190 3' -58 NC_004333.2 + 41429 0.66 0.538863
Target:  5'- -gGUCGGgcgCGUGCuCGAGCGCCAc--- -3'
miRNA:   3'- aaCGGCCa--GCGCG-GCUUGUGGUagcc -5'
17190 3' -58 NC_004333.2 + 9054 0.66 0.538863
Target:  5'- -cGUCGGUCGcCGCCGcGCACgGcCGc -3'
miRNA:   3'- aaCGGCCAGC-GCGGCuUGUGgUaGCc -5'
17190 3' -58 NC_004333.2 + 10828 0.66 0.538863
Target:  5'- --uUCGGUUGCGCCGG--GCCGcgCGGu -3'
miRNA:   3'- aacGGCCAGCGCGGCUugUGGUa-GCC- -5'
17190 3' -58 NC_004333.2 + 18386 0.66 0.538863
Target:  5'- -cGCCGGcaucaugcUCGUGCCGuccgaagcgcAACGCCucgcgAUCGGc -3'
miRNA:   3'- aaCGGCC--------AGCGCGGC----------UUGUGG-----UAGCC- -5'
17190 3' -58 NC_004333.2 + 30303 0.66 0.538863
Target:  5'- -gGCCGccGUCGCGCCugcGACACCAc--- -3'
miRNA:   3'- aaCGGC--CAGCGCGGc--UUGUGGUagcc -5'
17190 3' -58 NC_004333.2 + 20665 0.66 0.538863
Target:  5'- -gGCCGaGcCGCGCCugcagaAACACCA-CGGc -3'
miRNA:   3'- aaCGGC-CaGCGCGGc-----UUGUGGUaGCC- -5'
17190 3' -58 NC_004333.2 + 18498 0.66 0.538863
Target:  5'- gUUGCCGG-CaCGCCGAcggacGCugCAgCGGc -3'
miRNA:   3'- -AACGGCCaGcGCGGCU-----UGugGUaGCC- -5'
17190 3' -58 NC_004333.2 + 45119 0.66 0.528334
Target:  5'- -cGCgCGGUguucagcguuugCGCGCCGccAGCGCCAcgcgCGGu -3'
miRNA:   3'- aaCG-GCCA------------GCGCGGC--UUGUGGUa---GCC- -5'
17190 3' -58 NC_004333.2 + 23837 0.66 0.528334
Target:  5'- gUGCCGuUCGCGCaGAACGacUCGUCGc -3'
miRNA:   3'- aACGGCcAGCGCGgCUUGU--GGUAGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.