miRNA display CGI


Results 1 - 20 of 105 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17190 3' -58 NC_004333.2 + 35016 1.07 0.000655
Target:  5'- aUUGCCGGUCGCGCCGAACACCAUCGGc -3'
miRNA:   3'- -AACGGCCAGCGCGGCUUGUGGUAGCC- -5'
17190 3' -58 NC_004333.2 + 28964 0.78 0.098264
Target:  5'- -cGCCGGcCuGCGCCGAGCGCgAUCGc -3'
miRNA:   3'- aaCGGCCaG-CGCGGCUUGUGgUAGCc -5'
17190 3' -58 NC_004333.2 + 8602 0.76 0.119482
Target:  5'- aUGCCGGUCGCGCUGuuCGgCA-CGGg -3'
miRNA:   3'- aACGGCCAGCGCGGCuuGUgGUaGCC- -5'
17190 3' -58 NC_004333.2 + 8712 0.76 0.122842
Target:  5'- -aGCCGGgcgcCGCGCCGAGCucgacgucGCgCAUCGGc -3'
miRNA:   3'- aaCGGCCa---GCGCGGCUUG--------UG-GUAGCC- -5'
17190 3' -58 NC_004333.2 + 26586 0.76 0.122842
Target:  5'- cUGUCGG-CGCGCCGGACuuCAUCGa -3'
miRNA:   3'- aACGGCCaGCGCGGCUUGugGUAGCc -5'
17190 3' -58 NC_004333.2 + 31227 0.76 0.126289
Target:  5'- aUGCCGGUCGCgacgGCCGcgcggcgcAGCGCCGucUCGGu -3'
miRNA:   3'- aACGGCCAGCG----CGGC--------UUGUGGU--AGCC- -5'
17190 3' -58 NC_004333.2 + 11807 0.75 0.148914
Target:  5'- gUGCCGGUCGgcUGCCGGACAUCGcgcaGGa -3'
miRNA:   3'- aACGGCCAGC--GCGGCUUGUGGUag--CC- -5'
17190 3' -58 NC_004333.2 + 7919 0.75 0.153027
Target:  5'- gUUGCgGGuaguugauauUCGCGCCGcuguCGCCGUCGGa -3'
miRNA:   3'- -AACGgCC----------AGCGCGGCuu--GUGGUAGCC- -5'
17190 3' -58 NC_004333.2 + 16947 0.74 0.170524
Target:  5'- -aGUCGGcCGUGCCGAACAgucgcCCGUCGa -3'
miRNA:   3'- aaCGGCCaGCGCGGCUUGU-----GGUAGCc -5'
17190 3' -58 NC_004333.2 + 27448 0.74 0.170524
Target:  5'- -gGCC-GUCGCGCCGGGCACUuccaCGGc -3'
miRNA:   3'- aaCGGcCAGCGCGGCUUGUGGua--GCC- -5'
17190 3' -58 NC_004333.2 + 11870 0.73 0.194895
Target:  5'- cUGCCGGUCG-GCCGAaacgggcgcgaGCACCuuGUCGu -3'
miRNA:   3'- aACGGCCAGCgCGGCU-----------UGUGG--UAGCc -5'
17190 3' -58 NC_004333.2 + 25348 0.73 0.205469
Target:  5'- gUUGCCGGUCguuGCGUCGuACAUuaCGUCGGu -3'
miRNA:   3'- -AACGGCCAG---CGCGGCuUGUG--GUAGCC- -5'
17190 3' -58 NC_004333.2 + 30073 0.73 0.205469
Target:  5'- -cGCgGGUCGaUGCCGuAGCGCCGaCGGa -3'
miRNA:   3'- aaCGgCCAGC-GCGGC-UUGUGGUaGCC- -5'
17190 3' -58 NC_004333.2 + 18174 0.73 0.205469
Target:  5'- aUUGCCGG-CGUGCCGGgugauGCGCuCGUCGu -3'
miRNA:   3'- -AACGGCCaGCGCGGCU-----UGUG-GUAGCc -5'
17190 3' -58 NC_004333.2 + 41902 0.72 0.222259
Target:  5'- -cGaCCGcUCGCgGCCGGGCGCCGUCGu -3'
miRNA:   3'- aaC-GGCcAGCG-CGGCUUGUGGUAGCc -5'
17190 3' -58 NC_004333.2 + 39007 0.72 0.228109
Target:  5'- aUUGCCGGUCGCGUCGuGguUCGUCu- -3'
miRNA:   3'- -AACGGCCAGCGCGGCuUguGGUAGcc -5'
17190 3' -58 NC_004333.2 + 36196 0.72 0.240202
Target:  5'- -cGCCGGUCGCGCag---GCCGUCGc -3'
miRNA:   3'- aaCGGCCAGCGCGgcuugUGGUAGCc -5'
17190 3' -58 NC_004333.2 + 20412 0.71 0.265988
Target:  5'- -aGCCGGUCGCGgU--AC-CCGUCGGc -3'
miRNA:   3'- aaCGGCCAGCGCgGcuUGuGGUAGCC- -5'
17190 3' -58 NC_004333.2 + 47570 0.71 0.265988
Target:  5'- --aCUGGUCGCGCCGGccgGCGCC-UCGu -3'
miRNA:   3'- aacGGCCAGCGCGGCU---UGUGGuAGCc -5'
17190 3' -58 NC_004333.2 + 11884 0.71 0.265988
Target:  5'- -cGCC-GUCGCGCUGAugGCCgcGUCGu -3'
miRNA:   3'- aaCGGcCAGCGCGGCUugUGG--UAGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.