miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17190 3' -58 NC_004333.2 + 23837 0.66 0.528334
Target:  5'- gUGCCGuUCGCGCaGAACGacUCGUCGc -3'
miRNA:   3'- aACGGCcAGCGCGgCUUGU--GGUAGCc -5'
17190 3' -58 NC_004333.2 + 18656 0.66 0.528334
Target:  5'- -cGCCGGUCGUuuguuGCaCGAACGgguUCGGa -3'
miRNA:   3'- aaCGGCCAGCG-----CG-GCUUGUgguAGCC- -5'
17190 3' -58 NC_004333.2 + 45119 0.66 0.528334
Target:  5'- -cGCgCGGUguucagcguuugCGCGCCGccAGCGCCAcgcgCGGu -3'
miRNA:   3'- aaCG-GCCA------------GCGCGGC--UUGUGGUa---GCC- -5'
17190 3' -58 NC_004333.2 + 6666 0.66 0.528334
Target:  5'- -cGCUGGgcggCGCGCCGuGGCGgCGaugCGGg -3'
miRNA:   3'- aaCGGCCa---GCGCGGC-UUGUgGUa--GCC- -5'
17190 3' -58 NC_004333.2 + 10193 0.66 0.528334
Target:  5'- aUGCa-GUCGCGCaCGcGCaugcgGCCGUCGGc -3'
miRNA:   3'- aACGgcCAGCGCG-GCuUG-----UGGUAGCC- -5'
17190 3' -58 NC_004333.2 + 2707 0.66 0.528334
Target:  5'- -cGCCGGcaagCGCGauGAaccGCGCgGUCGGu -3'
miRNA:   3'- aaCGGCCa---GCGCggCU---UGUGgUAGCC- -5'
17190 3' -58 NC_004333.2 + 19820 0.66 0.528334
Target:  5'- -gGCCGaUCGCGUCGuugacggcagcGGCGCCGUCu- -3'
miRNA:   3'- aaCGGCcAGCGCGGC-----------UUGUGGUAGcc -5'
17190 3' -58 NC_004333.2 + 7776 0.66 0.52519
Target:  5'- -cGCUGucCGCGCCGAuCACCgcuacgacgccgugGUCGGg -3'
miRNA:   3'- aaCGGCcaGCGCGGCUuGUGG--------------UAGCC- -5'
17190 3' -58 NC_004333.2 + 29993 0.66 0.517882
Target:  5'- -cGCCGa--GCG-CGAGCACCAUgCGGc -3'
miRNA:   3'- aaCGGCcagCGCgGCUUGUGGUA-GCC- -5'
17190 3' -58 NC_004333.2 + 2308 0.66 0.511651
Target:  5'- -gGCCGGcacgccCGCGUugaacuggcggaaugCGAGCACCGUgCGGc -3'
miRNA:   3'- aaCGGCCa-----GCGCG---------------GCUUGUGGUA-GCC- -5'
17190 3' -58 NC_004333.2 + 45039 0.66 0.507514
Target:  5'- -cGCUGGcggCGCGCaaacgcuGAACACCGcgCGGc -3'
miRNA:   3'- aaCGGCCa--GCGCGg------CUUGUGGUa-GCC- -5'
17190 3' -58 NC_004333.2 + 8759 0.66 0.507514
Target:  5'- -gGUCGGcacguucgcCGUGCUGAACGCCGaCGGc -3'
miRNA:   3'- aaCGGCCa--------GCGCGGCUUGUGGUaGCC- -5'
17190 3' -58 NC_004333.2 + 27748 0.66 0.507514
Target:  5'- --uCUGGUCGgcCGCCGAGC-CCGUCaGGc -3'
miRNA:   3'- aacGGCCAGC--GCGGCUUGuGGUAG-CC- -5'
17190 3' -58 NC_004333.2 + 32356 0.66 0.507514
Target:  5'- -cGUCGacaUCGcCGCCGAcccGCGCCAUcCGGa -3'
miRNA:   3'- aaCGGCc--AGC-GCGGCU---UGUGGUA-GCC- -5'
17190 3' -58 NC_004333.2 + 22371 0.66 0.507514
Target:  5'- -cGCCGcaCGCGCCgagGAugGCCGUCu- -3'
miRNA:   3'- aaCGGCcaGCGCGG---CUugUGGUAGcc -5'
17190 3' -58 NC_004333.2 + 13052 0.66 0.507514
Target:  5'- uUUGUCGaugCGCGCCGAGCugaucaaccGCUAUCGc -3'
miRNA:   3'- -AACGGCca-GCGCGGCUUG---------UGGUAGCc -5'
17190 3' -58 NC_004333.2 + 39253 0.66 0.507514
Target:  5'- cUGCCGGUgcaGCGCgCGcAGCACgGgCGGc -3'
miRNA:   3'- aACGGCCAg--CGCG-GC-UUGUGgUaGCC- -5'
17190 3' -58 NC_004333.2 + 20569 0.67 0.497234
Target:  5'- -cGUCGG-CGCGUCGGgucGCGCCGU-GGu -3'
miRNA:   3'- aaCGGCCaGCGCGGCU---UGUGGUAgCC- -5'
17190 3' -58 NC_004333.2 + 48163 0.67 0.497234
Target:  5'- -cGcCCGGUUGcCGCCu-GCGCCucGUCGGc -3'
miRNA:   3'- aaC-GGCCAGC-GCGGcuUGUGG--UAGCC- -5'
17190 3' -58 NC_004333.2 + 46195 0.67 0.496212
Target:  5'- -gGCUGGgcgcgucUCGCGCCGGaucaGCGCCAggcgcUCGa -3'
miRNA:   3'- aaCGGCC-------AGCGCGGCU----UGUGGU-----AGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.