miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17190 3' -58 NC_004333.2 + 253 0.67 0.476965
Target:  5'- gUGCCguucgauguGGUCGUcacgccGCCGAGCACgGUCa- -3'
miRNA:   3'- aACGG---------CCAGCG------CGGCUUGUGgUAGcc -5'
17190 3' -58 NC_004333.2 + 802 0.66 0.560125
Target:  5'- gUGCCGGUCGCcggcgcagGaCCGAACAgCugcacuUCGa -3'
miRNA:   3'- aACGGCCAGCG--------C-GGCUUGUgGu-----AGCc -5'
17190 3' -58 NC_004333.2 + 2308 0.66 0.511651
Target:  5'- -gGCCGGcacgccCGCGUugaacuggcggaaugCGAGCACCGUgCGGc -3'
miRNA:   3'- aaCGGCCa-----GCGCG---------------GCUUGUGGUA-GCC- -5'
17190 3' -58 NC_004333.2 + 2673 0.67 0.480987
Target:  5'- -cGCCGGcagcuugcagcgUCGCGCCGGcgGCGgccgacaggccgaucUCGUCGGc -3'
miRNA:   3'- aaCGGCC------------AGCGCGGCU--UGU---------------GGUAGCC- -5'
17190 3' -58 NC_004333.2 + 2707 0.66 0.528334
Target:  5'- -cGCCGGcaagCGCGauGAaccGCGCgGUCGGu -3'
miRNA:   3'- aaCGGCCa---GCGCggCU---UGUGgUAGCC- -5'
17190 3' -58 NC_004333.2 + 2768 0.69 0.36514
Target:  5'- gUGCCGGUCGCGuUCGucACgACCGUgaagCGGu -3'
miRNA:   3'- aACGGCCAGCGC-GGCu-UG-UGGUA----GCC- -5'
17190 3' -58 NC_004333.2 + 4667 0.68 0.431985
Target:  5'- -gGCCGG-CGCGCgGGuCuuucuucaggaucgaGCCAUCGGc -3'
miRNA:   3'- aaCGGCCaGCGCGgCUuG---------------UGGUAGCC- -5'
17190 3' -58 NC_004333.2 + 6666 0.66 0.528334
Target:  5'- -cGCUGGgcggCGCGCCGuGGCGgCGaugCGGg -3'
miRNA:   3'- aaCGGCCa---GCGCGGC-UUGUgGUa--GCC- -5'
17190 3' -58 NC_004333.2 + 6715 0.71 0.293969
Target:  5'- -cGCCGaGcgCGCuGCCGAGCGCgAUCGa -3'
miRNA:   3'- aaCGGC-Ca-GCG-CGGCUUGUGgUAGCc -5'
17190 3' -58 NC_004333.2 + 6813 0.66 0.543095
Target:  5'- -cGCCuGUCGCaacggcggcacuccgGCgGGGCACuCGUCGGc -3'
miRNA:   3'- aaCGGcCAGCG---------------CGgCUUGUG-GUAGCC- -5'
17190 3' -58 NC_004333.2 + 7776 0.66 0.52519
Target:  5'- -cGCUGucCGCGCCGAuCACCgcuacgacgccgugGUCGGg -3'
miRNA:   3'- aaCGGCcaGCGCGGCUuGUGG--------------UAGCC- -5'
17190 3' -58 NC_004333.2 + 7919 0.75 0.153027
Target:  5'- gUUGCgGGuaguugauauUCGCGCCGcuguCGCCGUCGGa -3'
miRNA:   3'- -AACGgCC----------AGCGCGGCuu--GUGGUAGCC- -5'
17190 3' -58 NC_004333.2 + 8602 0.76 0.119482
Target:  5'- aUGCCGGUCGCGCUGuuCGgCA-CGGg -3'
miRNA:   3'- aACGGCCAGCGCGGCuuGUgGUaGCC- -5'
17190 3' -58 NC_004333.2 + 8712 0.76 0.122842
Target:  5'- -aGCCGGgcgcCGCGCCGAGCucgacgucGCgCAUCGGc -3'
miRNA:   3'- aaCGGCCa---GCGCGGCUUG--------UG-GUAGCC- -5'
17190 3' -58 NC_004333.2 + 8759 0.66 0.507514
Target:  5'- -gGUCGGcacguucgcCGUGCUGAACGCCGaCGGc -3'
miRNA:   3'- aaCGGCCa--------GCGCGGCUUGUGGUaGCC- -5'
17190 3' -58 NC_004333.2 + 8984 0.69 0.382489
Target:  5'- -aGCCGcGUCGCGCaucGACGCCAaccUCGc -3'
miRNA:   3'- aaCGGC-CAGCGCGgc-UUGUGGU---AGCc -5'
17190 3' -58 NC_004333.2 + 9054 0.66 0.538863
Target:  5'- -cGUCGGUCGcCGCCGcGCACgGcCGc -3'
miRNA:   3'- aaCGGCCAGC-GCGGCuUGUGgUaGCc -5'
17190 3' -58 NC_004333.2 + 9634 0.69 0.370287
Target:  5'- cUGCCGGcggCGCGCCu-GCGCCcggcuguucguuuUCGGg -3'
miRNA:   3'- aACGGCCa--GCGCGGcuUGUGGu------------AGCC- -5'
17190 3' -58 NC_004333.2 + 9751 0.68 0.428191
Target:  5'- -cGCCGGaugCGCGCCcgucgucaacGAGCGCCAcaUGGu -3'
miRNA:   3'- aaCGGCCa--GCGCGG----------CUUGUGGUa-GCC- -5'
17190 3' -58 NC_004333.2 + 10193 0.66 0.528334
Target:  5'- aUGCa-GUCGCGCaCGcGCaugcgGCCGUCGGc -3'
miRNA:   3'- aACGgcCAGCGCG-GCuUG-----UGGUAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.