miRNA display CGI


Results 1 - 20 of 105 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17190 3' -58 NC_004333.2 + 35016 1.07 0.000655
Target:  5'- aUUGCCGGUCGCGCCGAACACCAUCGGc -3'
miRNA:   3'- -AACGGCCAGCGCGGCUUGUGGUAGCC- -5'
17190 3' -58 NC_004333.2 + 28409 0.68 0.399472
Target:  5'- -cGCCGcaaucgcaacguGUCGCGCCGGugucGCGCUgauucauguacuuGUCGGg -3'
miRNA:   3'- aaCGGC------------CAGCGCGGCU----UGUGG-------------UAGCC- -5'
17190 3' -58 NC_004333.2 + 19499 0.68 0.418793
Target:  5'- -cGCUGG-CGCGCUGGcgGCGCUcgUGGc -3'
miRNA:   3'- aaCGGCCaGCGCGGCU--UGUGGuaGCC- -5'
17190 3' -58 NC_004333.2 + 30152 0.66 0.560125
Target:  5'- -cGCCGccuuucguGUUGUacGCCGAggGCACCAagUCGGa -3'
miRNA:   3'- aaCGGC--------CAGCG--CGGCU--UGUGGU--AGCC- -5'
17190 3' -58 NC_004333.2 + 25348 0.73 0.205469
Target:  5'- gUUGCCGGUCguuGCGUCGuACAUuaCGUCGGu -3'
miRNA:   3'- -AACGGCCAG---CGCGGCuUGUG--GUAGCC- -5'
17190 3' -58 NC_004333.2 + 30073 0.73 0.205469
Target:  5'- -cGCgGGUCGaUGCCGuAGCGCCGaCGGa -3'
miRNA:   3'- aaCGgCCAGC-GCGGC-UUGUGGUaGCC- -5'
17190 3' -58 NC_004333.2 + 30680 0.71 0.286765
Target:  5'- -aGCCGuUCGCGCCGc-CGCCggCGGc -3'
miRNA:   3'- aaCGGCcAGCGCGGCuuGUGGuaGCC- -5'
17190 3' -58 NC_004333.2 + 20331 0.7 0.319516
Target:  5'- cUUGCCGGcCGUGCCGAcggguaccgcgaccgGCuucgugaacGCCGUCGa -3'
miRNA:   3'- -AACGGCCaGCGCGGCU---------------UG---------UGGUAGCc -5'
17190 3' -58 NC_004333.2 + 38611 0.69 0.356671
Target:  5'- -aGCCGGgCGCGCCGcu-GCCcgUGGu -3'
miRNA:   3'- aaCGGCCaGCGCGGCuugUGGuaGCC- -5'
17190 3' -58 NC_004333.2 + 25443 0.69 0.373746
Target:  5'- -cGCCGGgCGUGCCGGuuacgacgACACC--CGGg -3'
miRNA:   3'- aaCGGCCaGCGCGGCU--------UGUGGuaGCC- -5'
17190 3' -58 NC_004333.2 + 20512 0.69 0.36514
Target:  5'- cUGCCGGccgccgcCGCGCCGcuCGCUggCGGc -3'
miRNA:   3'- aACGGCCa------GCGCGGCuuGUGGuaGCC- -5'
17190 3' -58 NC_004333.2 + 23247 0.69 0.348342
Target:  5'- -cGCCGGUCGUGuuGuucGugACCGUCc- -3'
miRNA:   3'- aaCGGCCAGCGCggC---UugUGGUAGcc -5'
17190 3' -58 NC_004333.2 + 31227 0.76 0.126289
Target:  5'- aUGCCGGUCGCgacgGCCGcgcggcgcAGCGCCGucUCGGu -3'
miRNA:   3'- aACGGCCAGCG----CGGC--------UUGUGGU--AGCC- -5'
17190 3' -58 NC_004333.2 + 9634 0.69 0.370287
Target:  5'- cUGCCGGcggCGCGCCu-GCGCCcggcuguucguuuUCGGg -3'
miRNA:   3'- aACGGCCa--GCGCGGcuUGUGGu------------AGCC- -5'
17190 3' -58 NC_004333.2 + 7919 0.75 0.153027
Target:  5'- gUUGCgGGuaguugauauUCGCGCCGcuguCGCCGUCGGa -3'
miRNA:   3'- -AACGgCC----------AGCGCGGCuu--GUGGUAGCC- -5'
17190 3' -58 NC_004333.2 + 38383 0.7 0.332102
Target:  5'- gUGUCGGgUGCGCCGGcgugACGCCGgccaCGGu -3'
miRNA:   3'- aACGGCCaGCGCGGCU----UGUGGUa---GCC- -5'
17190 3' -58 NC_004333.2 + 10669 0.69 0.37288
Target:  5'- ---aCGGUCGCGCCGGccggugcACGCUAugcacUCGGu -3'
miRNA:   3'- aacgGCCAGCGCGGCU-------UGUGGU-----AGCC- -5'
17190 3' -58 NC_004333.2 + 41230 0.68 0.409522
Target:  5'- -cGCCGGUCGUGUC----GCCGUCGc -3'
miRNA:   3'- aaCGGCCAGCGCGGcuugUGGUAGCc -5'
17190 3' -58 NC_004333.2 + 11870 0.73 0.194895
Target:  5'- cUGCCGGUCG-GCCGAaacgggcgcgaGCACCuuGUCGu -3'
miRNA:   3'- aACGGCCAGCgCGGCU-----------UGUGG--UAGCc -5'
17190 3' -58 NC_004333.2 + 18174 0.73 0.205469
Target:  5'- aUUGCCGG-CGUGCCGGgugauGCGCuCGUCGu -3'
miRNA:   3'- -AACGGCCaGCGCGGCU-----UGUG-GUAGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.