miRNA display CGI


Results 1 - 20 of 29 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17191 3' -54.9 NC_004333.2 + 8139 0.66 0.718028
Target:  5'- gAGCC-CGUcgACGacAGGUgUGGCGACa -3'
miRNA:   3'- gUCGGuGCA--UGCguUCCA-ACCGCUGc -5'
17191 3' -54.9 NC_004333.2 + 35697 0.66 0.707179
Target:  5'- uCAGUCGCGaACGCGAGuGUcGGCucaGGCa -3'
miRNA:   3'- -GUCGGUGCaUGCGUUC-CAaCCG---CUGc -5'
17191 3' -54.9 NC_004333.2 + 15889 0.66 0.707179
Target:  5'- -uGCggaACGUGCGCAGGcGUcGGCG-CGa -3'
miRNA:   3'- guCGg--UGCAUGCGUUC-CAaCCGCuGC- -5'
17191 3' -54.9 NC_004333.2 + 38950 0.66 0.707179
Target:  5'- gCGGCgCGgGUGCGCGGacg-GGCGGCGu -3'
miRNA:   3'- -GUCG-GUgCAUGCGUUccaaCCGCUGC- -5'
17191 3' -54.9 NC_004333.2 + 20575 0.66 0.707179
Target:  5'- gCGGCgGCGgcCgGCAGcGGUUGcGCGGCa -3'
miRNA:   3'- -GUCGgUGCauG-CGUU-CCAAC-CGCUGc -5'
17191 3' -54.9 NC_004333.2 + 6670 0.66 0.707179
Target:  5'- gCGGCgCugGgcgGCGCGccG-UGGCGGCGa -3'
miRNA:   3'- -GUCG-GugCa--UGCGUucCaACCGCUGC- -5'
17191 3' -54.9 NC_004333.2 + 17529 0.66 0.707179
Target:  5'- gCGGCCuucGCGuUGCGCcacauccGGUgcccgGGCGACGu -3'
miRNA:   3'- -GUCGG---UGC-AUGCGuu-----CCAa----CCGCUGC- -5'
17191 3' -54.9 NC_004333.2 + 6689 0.67 0.663149
Target:  5'- -cGCCGCuucacgUGCGGGGcgcaUUGGCGACGa -3'
miRNA:   3'- guCGGUGcau---GCGUUCC----AACCGCUGC- -5'
17191 3' -54.9 NC_004333.2 + 39270 0.67 0.650927
Target:  5'- aGGCgCACGcGCGCGcgaucgcAGGUUGGCuGCu -3'
miRNA:   3'- gUCG-GUGCaUGCGU-------UCCAACCGcUGc -5'
17191 3' -54.9 NC_004333.2 + 37440 0.67 0.639798
Target:  5'- aCGGCCGCGcgACGCGgugcacgucgcguAGccagGGCGACGc -3'
miRNA:   3'- -GUCGGUGCa-UGCGU-------------UCcaa-CCGCUGC- -5'
17191 3' -54.9 NC_004333.2 + 45017 0.67 0.629775
Target:  5'- cCGGCCGCucgaccGCGCGuGGcgcUGGCGGCGc -3'
miRNA:   3'- -GUCGGUGca----UGCGUuCCa--ACCGCUGC- -5'
17191 3' -54.9 NC_004333.2 + 47793 0.67 0.61864
Target:  5'- aGGCCACGgcGCGCGAcGUgccGGCGAgCGu -3'
miRNA:   3'- gUCGGUGCa-UGCGUUcCAa--CCGCU-GC- -5'
17191 3' -54.9 NC_004333.2 + 16617 0.67 0.61864
Target:  5'- aGGCaCAUGUGCGCAuacGGUcGGUGAg- -3'
miRNA:   3'- gUCG-GUGCAUGCGUu--CCAaCCGCUgc -5'
17191 3' -54.9 NC_004333.2 + 32171 0.68 0.596418
Target:  5'- cCGGCCACGcgcuuacuCGcCGAGGUUcaGGaCGACGa -3'
miRNA:   3'- -GUCGGUGCau------GC-GUUCCAA--CC-GCUGC- -5'
17191 3' -54.9 NC_004333.2 + 9661 0.69 0.541554
Target:  5'- -uGCCGCGccggcugGCGCugAAGG-UGGCGGCa -3'
miRNA:   3'- guCGGUGCa------UGCG--UUCCaACCGCUGc -5'
17191 3' -54.9 NC_004333.2 + 779 0.69 0.509436
Target:  5'- -cGCCACG-GCGCucgcGGgcGGCGGCa -3'
miRNA:   3'- guCGGUGCaUGCGuu--CCaaCCGCUGc -5'
17191 3' -54.9 NC_004333.2 + 20848 0.69 0.507323
Target:  5'- gCGGCCGCGcauccugcucgaACGCcacAAGGUaugGGCGGCGa -3'
miRNA:   3'- -GUCGGUGCa-----------UGCG---UUCCAa--CCGCUGC- -5'
17191 3' -54.9 NC_004333.2 + 32271 0.69 0.488474
Target:  5'- aAGCCuucCGgaugGCGC-GGGUcGGCGGCGa -3'
miRNA:   3'- gUCGGu--GCa---UGCGuUCCAaCCGCUGC- -5'
17191 3' -54.9 NC_004333.2 + 43408 0.7 0.467926
Target:  5'- gCAGCCGCccGCGCAggcagacgcucGGGUcgGGCuGACGg -3'
miRNA:   3'- -GUCGGUGcaUGCGU-----------UCCAa-CCG-CUGC- -5'
17191 3' -54.9 NC_004333.2 + 22079 0.7 0.457819
Target:  5'- -cGCCAgGaaagagGCGCccAGGUUGGCGACc -3'
miRNA:   3'- guCGGUgCa-----UGCGu-UCCAACCGCUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.