miRNA display CGI


Results 1 - 20 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17191 5' -56.3 NC_004333.2 + 33162 0.66 0.61085
Target:  5'- aGCCGGCacGCGGCCggcuaAGCGCUUCc-- -3'
miRNA:   3'- -UGGCCG--CGUUGGaag--UUGCGGAGcaa -5'
17191 5' -56.3 NC_004333.2 + 6754 0.66 0.61085
Target:  5'- -aCGGCGCc-CCggUCGcGCGCCUCGa- -3'
miRNA:   3'- ugGCCGCGuuGGa-AGU-UGCGGAGCaa -5'
17191 5' -56.3 NC_004333.2 + 17507 0.66 0.607506
Target:  5'- uCCGGUGCccgggcgacguuuuGAUCgUCAGCGCgUCGUg -3'
miRNA:   3'- uGGCCGCG--------------UUGGaAGUUGCGgAGCAa -5'
17191 5' -56.3 NC_004333.2 + 9361 0.66 0.59971
Target:  5'- cGCgCGGCGUcgGGCCUUCuu--CCUCGUUg -3'
miRNA:   3'- -UG-GCCGCG--UUGGAAGuugcGGAGCAA- -5'
17191 5' -56.3 NC_004333.2 + 18176 0.66 0.59971
Target:  5'- uGCCGGCGU-GCCgggUGAUGCgCUCGUc -3'
miRNA:   3'- -UGGCCGCGuUGGaa-GUUGCG-GAGCAa -5'
17191 5' -56.3 NC_004333.2 + 38306 0.66 0.588599
Target:  5'- gACCGuGCacgcgGCGACCggCGaaauGCGCCUCGa- -3'
miRNA:   3'- -UGGC-CG-----CGUUGGaaGU----UGCGGAGCaa -5'
17191 5' -56.3 NC_004333.2 + 8999 0.66 0.588599
Target:  5'- cGCCGGCGCGaacgaaGCCgcgucgcgcaUCGACGCCaaccUCGc- -3'
miRNA:   3'- -UGGCCGCGU------UGGa---------AGUUGCGG----AGCaa -5'
17191 5' -56.3 NC_004333.2 + 8777 0.66 0.588599
Target:  5'- aGCUGGCGaagucGCCggCAAUGCCUUGc- -3'
miRNA:   3'- -UGGCCGCgu---UGGaaGUUGCGGAGCaa -5'
17191 5' -56.3 NC_004333.2 + 10680 0.66 0.577525
Target:  5'- gGCCGGUGCAcGCUaugcacucggUUCGACGCUguUCGa- -3'
miRNA:   3'- -UGGCCGCGU-UGG----------AAGUUGCGG--AGCaa -5'
17191 5' -56.3 NC_004333.2 + 19499 0.66 0.577525
Target:  5'- cGCUGGCGC-GCUggCGGCG-CUCGUg -3'
miRNA:   3'- -UGGCCGCGuUGGaaGUUGCgGAGCAa -5'
17191 5' -56.3 NC_004333.2 + 9682 0.66 0.577525
Target:  5'- aGCCGGUgcGCAACCggcCGAUGCCgCGc- -3'
miRNA:   3'- -UGGCCG--CGUUGGaa-GUUGCGGaGCaa -5'
17191 5' -56.3 NC_004333.2 + 17687 0.66 0.566498
Target:  5'- cACCgGGCGCGGCCg---GCGUCUUGa- -3'
miRNA:   3'- -UGG-CCGCGUUGGaaguUGCGGAGCaa -5'
17191 5' -56.3 NC_004333.2 + 18386 0.66 0.566498
Target:  5'- cGCCGGCaucauGCucguGCCguccgaagcgCAACGCCUCGc- -3'
miRNA:   3'- -UGGCCG-----CGu---UGGaa--------GUUGCGGAGCaa -5'
17191 5' -56.3 NC_004333.2 + 4665 0.66 0.566498
Target:  5'- uGCCGGCGCGGCCgUUCAugGaaaagaCGa- -3'
miRNA:   3'- -UGGCCGCGUUGG-AAGUugCgga---GCaa -5'
17191 5' -56.3 NC_004333.2 + 7992 0.66 0.555526
Target:  5'- -gCGGCGCGaauaucaacuACCcgCAACGCCagUCGUa -3'
miRNA:   3'- ugGCCGCGU----------UGGaaGUUGCGG--AGCAa -5'
17191 5' -56.3 NC_004333.2 + 2378 0.66 0.555526
Target:  5'- gACgCGGCGUAGCCcaugaCGGCGCCggCGg- -3'
miRNA:   3'- -UG-GCCGCGUUGGaa---GUUGCGGa-GCaa -5'
17191 5' -56.3 NC_004333.2 + 46832 0.67 0.533777
Target:  5'- aGCgCGGCG-GACaCUUCGACGCCgagugCGUc -3'
miRNA:   3'- -UG-GCCGCgUUG-GAAGUUGCGGa----GCAa -5'
17191 5' -56.3 NC_004333.2 + 29993 0.67 0.523015
Target:  5'- cGCCGaGCGCGagcACCaugCGGCGCCgcUCGUc -3'
miRNA:   3'- -UGGC-CGCGU---UGGaa-GUUGCGG--AGCAa -5'
17191 5' -56.3 NC_004333.2 + 2653 0.67 0.512338
Target:  5'- uGCCGGCGUAucaGCCg-CAACGCCg---- -3'
miRNA:   3'- -UGGCCGCGU---UGGaaGUUGCGGagcaa -5'
17191 5' -56.3 NC_004333.2 + 30405 0.67 0.512338
Target:  5'- gACCGGCGCcgGACCgaauUCGcGCGCCguagCGa- -3'
miRNA:   3'- -UGGCCGCG--UUGGa---AGU-UGCGGa---GCaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.