miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17192 3' -54.7 NC_004333.2 + 25065 0.66 0.744712
Target:  5'- aGCGUG-ACagGCGGCGcgGACGcaGACGuuGCg -3'
miRNA:   3'- -UGCACaUGa-CGCCGCa-CUGC--UUGC--CG- -5'
17192 3' -54.7 NC_004333.2 + 35485 0.66 0.734171
Target:  5'- aACGg--GCcgGUGaGCGUGccgccuGCGAGCGGCa -3'
miRNA:   3'- -UGCacaUGa-CGC-CGCAC------UGCUUGCCG- -5'
17192 3' -54.7 NC_004333.2 + 17199 0.66 0.734171
Target:  5'- uGCGcUGcUGCU-CGGCgGUGACGuguuCGGCu -3'
miRNA:   3'- -UGC-AC-AUGAcGCCG-CACUGCuu--GCCG- -5'
17192 3' -54.7 NC_004333.2 + 36332 0.66 0.734171
Target:  5'- cGCGUGUcGCUGCauguCGUGGCu--CGGCg -3'
miRNA:   3'- -UGCACA-UGACGcc--GCACUGcuuGCCG- -5'
17192 3' -54.7 NC_004333.2 + 23093 0.66 0.734171
Target:  5'- -----cGCUGaCGGCaGUGcagGCGGGCGGCg -3'
miRNA:   3'- ugcacaUGAC-GCCG-CAC---UGCUUGCCG- -5'
17192 3' -54.7 NC_004333.2 + 2837 0.66 0.717095
Target:  5'- gACGUGaaUGCggcuucgaucagcguUGCGGCGUucgcgaacGACGucgcAGCGGCg -3'
miRNA:   3'- -UGCAC--AUG---------------ACGCCGCA--------CUGC----UUGCCG- -5'
17192 3' -54.7 NC_004333.2 + 30749 0.66 0.71279
Target:  5'- -----cGCcgGCGGCGgcGCGAACGGCu -3'
miRNA:   3'- ugcacaUGa-CGCCGCacUGCUUGCCG- -5'
17192 3' -54.7 NC_004333.2 + 17105 0.66 0.711712
Target:  5'- gACGccauUGgcCUGCaGCGUGcACGAgucgagcGCGGCg -3'
miRNA:   3'- -UGC----ACauGACGcCGCAC-UGCU-------UGCCG- -5'
17192 3' -54.7 NC_004333.2 + 15088 0.66 0.701973
Target:  5'- gGCGaGUuucGCGGCGUcGGCGucgGCGGCc -3'
miRNA:   3'- -UGCaCAugaCGCCGCA-CUGCu--UGCCG- -5'
17192 3' -54.7 NC_004333.2 + 8673 0.66 0.700888
Target:  5'- gACG-GUGCcGuCGGCGUucagcacGGCGAACGuGCc -3'
miRNA:   3'- -UGCaCAUGaC-GCCGCA-------CUGCUUGC-CG- -5'
17192 3' -54.7 NC_004333.2 + 42089 0.66 0.699802
Target:  5'- aGCGUcGUGCUGCgcgacgaGGCGUGucGCGAGgugcgccaguugcCGGUg -3'
miRNA:   3'- -UGCA-CAUGACG-------CCGCAC--UGCUU-------------GCCG- -5'
17192 3' -54.7 NC_004333.2 + 38951 0.67 0.691088
Target:  5'- aGCG-GcGCggGUGcGCG-GACGGGCGGCg -3'
miRNA:   3'- -UGCaCaUGa-CGC-CGCaCUGCUUGCCG- -5'
17192 3' -54.7 NC_004333.2 + 8780 0.67 0.691088
Target:  5'- cGCGg--ACUcgaGCGGCGUcACGGuCGGCa -3'
miRNA:   3'- -UGCacaUGA---CGCCGCAcUGCUuGCCG- -5'
17192 3' -54.7 NC_004333.2 + 8985 0.67 0.680145
Target:  5'- cCGUGcGCgGCGGCGaccGAC--GCGGCg -3'
miRNA:   3'- uGCACaUGaCGCCGCa--CUGcuUGCCG- -5'
17192 3' -54.7 NC_004333.2 + 26841 0.68 0.613897
Target:  5'- aGCGaGUGCUGUcGCGUcGCGcuCGGCa -3'
miRNA:   3'- -UGCaCAUGACGcCGCAcUGCuuGCCG- -5'
17192 3' -54.7 NC_004333.2 + 1161 0.68 0.602853
Target:  5'- gACGUGaACuUGCGGCacGUGAUGAAUGucGCc -3'
miRNA:   3'- -UGCACaUG-ACGCCG--CACUGCUUGC--CG- -5'
17192 3' -54.7 NC_004333.2 + 22180 0.68 0.602853
Target:  5'- gGCGgcgGCcgGCGGCGguucGGCGGcuGCGGCc -3'
miRNA:   3'- -UGCacaUGa-CGCCGCa---CUGCU--UGCCG- -5'
17192 3' -54.7 NC_004333.2 + 31256 0.68 0.596239
Target:  5'- gGCGUugucgaGUACggcgcgccgucuggGCGGCGaugccaaGGCGGGCGGCg -3'
miRNA:   3'- -UGCA------CAUGa-------------CGCCGCa------CUGCUUGCCG- -5'
17192 3' -54.7 NC_004333.2 + 31380 0.68 0.591836
Target:  5'- gGCGccGUGCU-CGGCGUcGGCGcagguGCGGCc -3'
miRNA:   3'- -UGCa-CAUGAcGCCGCA-CUGCu----UGCCG- -5'
17192 3' -54.7 NC_004333.2 + 48069 0.69 0.56882
Target:  5'- gAUGUcGUGCUGCucGGUGccGACGAggcgcagGCGGCa -3'
miRNA:   3'- -UGCA-CAUGACG--CCGCa-CUGCU-------UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.