miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17192 3' -54.7 NC_004333.2 + 37238 0.69 0.537428
Target:  5'- gGCGUGUcgccgcGCUGCGGgaugccgcaCGUGaucGCGucguGCGGCg -3'
miRNA:   3'- -UGCACA------UGACGCC---------GCAC---UGCu---UGCCG- -5'
17192 3' -54.7 NC_004333.2 + 19713 0.69 0.537428
Target:  5'- cGCGUGcucgGCgcugGUGGCGUGcaaGACGGCg -3'
miRNA:   3'- -UGCACa---UGa---CGCCGCACugcUUGCCG- -5'
17192 3' -54.7 NC_004333.2 + 2097 0.7 0.505608
Target:  5'- gACGUGaucgaUGCGGcCGUGACGucgGGCa -3'
miRNA:   3'- -UGCACaug--ACGCC-GCACUGCuugCCG- -5'
17192 3' -54.7 NC_004333.2 + 6681 0.7 0.495179
Target:  5'- uACcUGcgACUGCGGCGcugGGCGGcgcgccgugGCGGCg -3'
miRNA:   3'- -UGcACa-UGACGCCGCa--CUGCU---------UGCCG- -5'
17192 3' -54.7 NC_004333.2 + 10536 0.71 0.444618
Target:  5'- aGCGaaUGUccuGCUugGCGGCGUGugucaGAGCGGCu -3'
miRNA:   3'- -UGC--ACA---UGA--CGCCGCACug---CUUGCCG- -5'
17192 3' -54.7 NC_004333.2 + 15149 0.71 0.415706
Target:  5'- gGCGUcgGUugagUUGCGGCGa-GCGAGCGGCa -3'
miRNA:   3'- -UGCA--CAu---GACGCCGCacUGCUUGCCG- -5'
17192 3' -54.7 NC_004333.2 + 13358 0.73 0.328174
Target:  5'- -gGUGUACgggcGCGGC---ACGAGCGGCg -3'
miRNA:   3'- ugCACAUGa---CGCCGcacUGCUUGCCG- -5'
17192 3' -54.7 NC_004333.2 + 20699 0.73 0.325769
Target:  5'- gGCGUGUACggaucgcagacgaaUGCGGUGaUGACGGcGCGcGCg -3'
miRNA:   3'- -UGCACAUG--------------ACGCCGC-ACUGCU-UGC-CG- -5'
17192 3' -54.7 NC_004333.2 + 3307 0.74 0.297186
Target:  5'- uCGUGcagaUGCUGCccGGCGUcaucggGGCGGGCGGCg -3'
miRNA:   3'- uGCAC----AUGACG--CCGCA------CUGCUUGCCG- -5'
17192 3' -54.7 NC_004333.2 + 38380 0.74 0.273369
Target:  5'- cGCGUGUcgGgUGCgccGGCGUGACGccggccacggucaaGACGGCg -3'
miRNA:   3'- -UGCACA--UgACG---CCGCACUGC--------------UUGCCG- -5'
17192 3' -54.7 NC_004333.2 + 20491 0.78 0.166356
Target:  5'- aACGUGUuuuCgaaGGCgGUGACGAGCGGCg -3'
miRNA:   3'- -UGCACAu--GacgCCG-CACUGCUUGCCG- -5'
17192 3' -54.7 NC_004333.2 + 350 0.8 0.119105
Target:  5'- gACGUcgccgugaccGUGCUcgGCGGCGUGACGAccacaucgaACGGCa -3'
miRNA:   3'- -UGCA----------CAUGA--CGCCGCACUGCU---------UGCCG- -5'
17192 3' -54.7 NC_004333.2 + 37435 1.12 0.000656
Target:  5'- cACGUGUACUGCGGCGUGACGAACGGCg -3'
miRNA:   3'- -UGCACAUGACGCCGCACUGCUUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.