miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17192 5' -56.3 NC_004333.2 + 3373 0.66 0.61864
Target:  5'- aCCGcGCGC-CGCCGcGCGCAcaaGgAGAa -3'
miRNA:   3'- -GGC-CGCGaGCGGUuUGCGUa--CgUCUa -5'
17192 5' -56.3 NC_004333.2 + 775 0.66 0.61864
Target:  5'- aCGGCGCUCGC-GGGCgGCG-GCAcGAUc -3'
miRNA:   3'- gGCCGCGAGCGgUUUG-CGUaCGU-CUA- -5'
17192 5' -56.3 NC_004333.2 + 38078 0.66 0.61864
Target:  5'- gUCGGCGCacuggaaGCCGagcGACGCggGCAGu- -3'
miRNA:   3'- -GGCCGCGag-----CGGU---UUGCGuaCGUCua -5'
17192 5' -56.3 NC_004333.2 + 32924 0.66 0.61864
Target:  5'- aCGGUGC-CGCgacaAAugGCA-GCAGGUa -3'
miRNA:   3'- gGCCGCGaGCGg---UUugCGUaCGUCUA- -5'
17192 5' -56.3 NC_004333.2 + 25718 0.66 0.607518
Target:  5'- aUGGCuuGCUCGCCGGccaGC-UGCAGGc -3'
miRNA:   3'- gGCCG--CGAGCGGUUug-CGuACGUCUa -5'
17192 5' -56.3 NC_004333.2 + 41231 0.66 0.607518
Target:  5'- gCCGGuCGUgUCGCCGucgcuGCGCuucccGCAGAUc -3'
miRNA:   3'- -GGCC-GCG-AGCGGUu----UGCGua---CGUCUA- -5'
17192 5' -56.3 NC_004333.2 + 45656 0.66 0.607518
Target:  5'- aCGcGCGCgCGCU--GCGCAUGCAc-- -3'
miRNA:   3'- gGC-CGCGaGCGGuuUGCGUACGUcua -5'
17192 5' -56.3 NC_004333.2 + 29463 0.66 0.607518
Target:  5'- aCGGCGUUaCGCCGuuUGCuucGCGGGc -3'
miRNA:   3'- gGCCGCGA-GCGGUuuGCGua-CGUCUa -5'
17192 5' -56.3 NC_004333.2 + 18603 0.66 0.596418
Target:  5'- aCCGGCGC--GgCAGGCGCggGCGGc- -3'
miRNA:   3'- -GGCCGCGagCgGUUUGCGuaCGUCua -5'
17192 5' -56.3 NC_004333.2 + 28680 0.66 0.596418
Target:  5'- uCCGGUGCgugcugcUGCCAGAuCGCGaGCAGc- -3'
miRNA:   3'- -GGCCGCGa------GCGGUUU-GCGUaCGUCua -5'
17192 5' -56.3 NC_004333.2 + 13848 0.66 0.585348
Target:  5'- aCgGGCGCcgCGUCGAGCGCAUugaGCGc-- -3'
miRNA:   3'- -GgCCGCGa-GCGGUUUGCGUA---CGUcua -5'
17192 5' -56.3 NC_004333.2 + 35739 0.66 0.585348
Target:  5'- uCCGGCgGCgUGCCAua-GCAgaGCAGAUa -3'
miRNA:   3'- -GGCCG-CGaGCGGUuugCGUa-CGUCUA- -5'
17192 5' -56.3 NC_004333.2 + 2864 0.66 0.585348
Target:  5'- gCGGCGUUCG-CGAACGaCGUcGCAGc- -3'
miRNA:   3'- gGCCGCGAGCgGUUUGC-GUA-CGUCua -5'
17192 5' -56.3 NC_004333.2 + 15309 0.66 0.574319
Target:  5'- aCCgGGCGCUUGCCGu-CGa--GCAGGUc -3'
miRNA:   3'- -GG-CCGCGAGCGGUuuGCguaCGUCUA- -5'
17192 5' -56.3 NC_004333.2 + 4768 0.66 0.574319
Target:  5'- uCCGGCaagaaGCUCGCCGAugGCucgauccUGaAGAa -3'
miRNA:   3'- -GGCCG-----CGAGCGGUUugCGu------ACgUCUa -5'
17192 5' -56.3 NC_004333.2 + 20678 0.66 0.574319
Target:  5'- cCCGacuGCGCgagGCCGAgccGCGCcUGCAGAa -3'
miRNA:   3'- -GGC---CGCGag-CGGUU---UGCGuACGUCUa -5'
17192 5' -56.3 NC_004333.2 + 12397 0.66 0.573218
Target:  5'- cCCGGCGCgccagugUCGCCGccuucggccaAGCGCuggacGUAGGUg -3'
miRNA:   3'- -GGCCGCG-------AGCGGU----------UUGCGua---CGUCUA- -5'
17192 5' -56.3 NC_004333.2 + 6417 0.66 0.563338
Target:  5'- aCCGGCGCaUCGUaaaaucGCGCgGUGCGGu- -3'
miRNA:   3'- -GGCCGCG-AGCGguu---UGCG-UACGUCua -5'
17192 5' -56.3 NC_004333.2 + 45042 0.67 0.552414
Target:  5'- aUGGUGCUgcagucggcCGCCGAcguGCGCGcGCAGGa -3'
miRNA:   3'- gGCCGCGA---------GCGGUU---UGCGUaCGUCUa -5'
17192 5' -56.3 NC_004333.2 + 18361 0.67 0.552414
Target:  5'- gCCGGCGaagaacuUCGCCuugauCGUuUGCAGGUg -3'
miRNA:   3'- -GGCCGCg------AGCGGuuu--GCGuACGUCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.