miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17192 5' -56.3 NC_004333.2 + 775 0.66 0.61864
Target:  5'- aCGGCGCUCGC-GGGCgGCG-GCAcGAUc -3'
miRNA:   3'- gGCCGCGAGCGgUUUG-CGUaCGU-CUA- -5'
17192 5' -56.3 NC_004333.2 + 2001 0.68 0.488474
Target:  5'- gCCGGUGCggGCCAgcuggugcaGACGCGUGgCuGGUa -3'
miRNA:   3'- -GGCCGCGagCGGU---------UUGCGUAC-GuCUA- -5'
17192 5' -56.3 NC_004333.2 + 2654 0.7 0.355169
Target:  5'- gCCGGCGUaucaGCCGcAACGCcgGCAGc- -3'
miRNA:   3'- -GGCCGCGag--CGGU-UUGCGuaCGUCua -5'
17192 5' -56.3 NC_004333.2 + 2864 0.66 0.585348
Target:  5'- gCGGCGUUCG-CGAACGaCGUcGCAGc- -3'
miRNA:   3'- gGCCGCGAGCgGUUUGC-GUA-CGUCua -5'
17192 5' -56.3 NC_004333.2 + 3004 0.67 0.530767
Target:  5'- gCCGGCGCgucCGCCGcGACGUAgcGCGcGAa -3'
miRNA:   3'- -GGCCGCGa--GCGGU-UUGCGUa-CGU-CUa -5'
17192 5' -56.3 NC_004333.2 + 3214 0.67 0.509436
Target:  5'- cCCGGCGCgccgccCGCCccgauGACGCcggGCAGc- -3'
miRNA:   3'- -GGCCGCGa-----GCGGu----UUGCGua-CGUCua -5'
17192 5' -56.3 NC_004333.2 + 3373 0.66 0.61864
Target:  5'- aCCGcGCGC-CGCCGcGCGCAcaaGgAGAa -3'
miRNA:   3'- -GGC-CGCGaGCGGUuUGCGUa--CgUCUa -5'
17192 5' -56.3 NC_004333.2 + 4768 0.66 0.574319
Target:  5'- uCCGGCaagaaGCUCGCCGAugGCucgauccUGaAGAa -3'
miRNA:   3'- -GGCCG-----CGAGCGGUUugCGu------ACgUCUa -5'
17192 5' -56.3 NC_004333.2 + 5066 0.73 0.236858
Target:  5'- gUCGGCGCggCGCUGAACaGCGUcaGCAGGUg -3'
miRNA:   3'- -GGCCGCGa-GCGGUUUG-CGUA--CGUCUA- -5'
17192 5' -56.3 NC_004333.2 + 5271 0.67 0.530767
Target:  5'- aCGGUGCcgaCGCC--GCGCcUGCAGGc -3'
miRNA:   3'- gGCCGCGa--GCGGuuUGCGuACGUCUa -5'
17192 5' -56.3 NC_004333.2 + 5545 0.67 0.509436
Target:  5'- gCCGGCGacgGCUuGGCGCGagUGCAGAc -3'
miRNA:   3'- -GGCCGCgagCGGuUUGCGU--ACGUCUa -5'
17192 5' -56.3 NC_004333.2 + 6417 0.66 0.563338
Target:  5'- aCCGGCGCaUCGUaaaaucGCGCgGUGCGGu- -3'
miRNA:   3'- -GGCCGCG-AGCGguu---UGCG-UACGUCua -5'
17192 5' -56.3 NC_004333.2 + 6602 0.69 0.399789
Target:  5'- aCGGCGCgcCGCCcAGCGCcgcaGUcGCAGGUa -3'
miRNA:   3'- gGCCGCGa-GCGGuUUGCG----UA-CGUCUA- -5'
17192 5' -56.3 NC_004333.2 + 8946 0.68 0.498906
Target:  5'- gCCGGCGCUguCCAu-CGCGUGCGcGGg -3'
miRNA:   3'- -GGCCGCGAgcGGUuuGCGUACGU-CUa -5'
17192 5' -56.3 NC_004333.2 + 9248 0.68 0.488474
Target:  5'- -gGGCGcCUCGCCGcgUGCggcauagccuucGUGCGGAUu -3'
miRNA:   3'- ggCCGC-GAGCGGUuuGCG------------UACGUCUA- -5'
17192 5' -56.3 NC_004333.2 + 9804 0.67 0.541554
Target:  5'- uCCGGCGCucaugUCGCC-GACGCG-GCGu-- -3'
miRNA:   3'- -GGCCGCG-----AGCGGuUUGCGUaCGUcua -5'
17192 5' -56.3 NC_004333.2 + 9827 0.67 0.541554
Target:  5'- cCCGucCGCgUCGCCuGAGCGCAUGaCGGGc -3'
miRNA:   3'- -GGCc-GCG-AGCGG-UUUGCGUAC-GUCUa -5'
17192 5' -56.3 NC_004333.2 + 10940 0.71 0.298809
Target:  5'- gCCGGCGUUcuucccgcgcggCGUCAAGCGCGUGaCAGc- -3'
miRNA:   3'- -GGCCGCGA------------GCGGUUUGCGUAC-GUCua -5'
17192 5' -56.3 NC_004333.2 + 11240 0.77 0.118764
Target:  5'- gCCGGCGCUCgagugcuGCCAGACGgcccaAUGCAGGc -3'
miRNA:   3'- -GGCCGCGAG-------CGGUUUGCg----UACGUCUa -5'
17192 5' -56.3 NC_004333.2 + 11926 0.67 0.520059
Target:  5'- gCGGCGCgcgCGCCAuuacGCGCGcuccagGCGGu- -3'
miRNA:   3'- gGCCGCGa--GCGGUu---UGCGUa-----CGUCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.