miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17192 5' -56.3 NC_004333.2 + 37470 1.07 0.000884
Target:  5'- uCCGGCGCUCGCCAAACGCAUGCAGAUc -3'
miRNA:   3'- -GGCCGCGAGCGGUUUGCGUACGUCUA- -5'
17192 5' -56.3 NC_004333.2 + 8946 0.68 0.498906
Target:  5'- gCCGGCGCUguCCAu-CGCGUGCGcGGg -3'
miRNA:   3'- -GGCCGCGAgcGGUuuGCGUACGU-CUa -5'
17192 5' -56.3 NC_004333.2 + 5545 0.67 0.509436
Target:  5'- gCCGGCGacgGCUuGGCGCGagUGCAGAc -3'
miRNA:   3'- -GGCCGCgagCGGuUUGCGU--ACGUCUa -5'
17192 5' -56.3 NC_004333.2 + 32924 0.66 0.61864
Target:  5'- aCGGUGC-CGCgacaAAugGCA-GCAGGUa -3'
miRNA:   3'- gGCCGCGaGCGg---UUugCGUaCGUCUA- -5'
17192 5' -56.3 NC_004333.2 + 43577 0.73 0.256221
Target:  5'- gUCGcGCGCUCGCCucGAACGCgaGUGCGcGAg -3'
miRNA:   3'- -GGC-CGCGAGCGG--UUUGCG--UACGU-CUa -5'
17192 5' -56.3 NC_004333.2 + 38717 0.71 0.301076
Target:  5'- gCCGGCGCUCGCCuucaccgauacaaucCGCAUGacgauGGAa -3'
miRNA:   3'- -GGCCGCGAGCGGuuu------------GCGUACg----UCUa -5'
17192 5' -56.3 NC_004333.2 + 28176 0.71 0.33013
Target:  5'- uCCGGUGCUCGaCAAACGUauaaAUGuCAGGc -3'
miRNA:   3'- -GGCCGCGAGCgGUUUGCG----UAC-GUCUa -5'
17192 5' -56.3 NC_004333.2 + 17243 0.71 0.33833
Target:  5'- gCCGGC-CU-GCCc-GCGCAUGCAGGa -3'
miRNA:   3'- -GGCCGcGAgCGGuuUGCGUACGUCUa -5'
17192 5' -56.3 NC_004333.2 + 15468 0.69 0.399789
Target:  5'- aUCGGCGCgcuuggcgUGCCGAGCGCAa-CAGGg -3'
miRNA:   3'- -GGCCGCGa-------GCGGUUUGCGUacGUCUa -5'
17192 5' -56.3 NC_004333.2 + 9248 0.68 0.488474
Target:  5'- -gGGCGcCUCGCCGcgUGCggcauagccuucGUGCGGAUu -3'
miRNA:   3'- ggCCGC-GAGCGGUuuGCG------------UACGUCUA- -5'
17192 5' -56.3 NC_004333.2 + 44718 0.69 0.437964
Target:  5'- -aGGCGUUCGCCGAgGCGCA-GCucGAc -3'
miRNA:   3'- ggCCGCGAGCGGUU-UGCGUaCGu-CUa -5'
17192 5' -56.3 NC_004333.2 + 6602 0.69 0.399789
Target:  5'- aCGGCGCgcCGCCcAGCGCcgcaGUcGCAGGUa -3'
miRNA:   3'- gGCCGCGa-GCGGuUUGCG----UA-CGUCUA- -5'
17192 5' -56.3 NC_004333.2 + 11240 0.77 0.118764
Target:  5'- gCCGGCGCUCgagugcuGCCAGACGgcccaAUGCAGGc -3'
miRNA:   3'- -GGCCGCGAG-------CGGUUUGCg----UACGUCUa -5'
17192 5' -56.3 NC_004333.2 + 22889 0.69 0.437964
Target:  5'- aCUGGCGCUCGU--GACGa--GCAGAa -3'
miRNA:   3'- -GGCCGCGAGCGguUUGCguaCGUCUa -5'
17192 5' -56.3 NC_004333.2 + 20654 0.75 0.166702
Target:  5'- aCGGCGCUgCGCCAGugGCAggagGCgcacgGGAUg -3'
miRNA:   3'- gGCCGCGA-GCGGUUugCGUa---CG-----UCUA- -5'
17192 5' -56.3 NC_004333.2 + 2654 0.7 0.355169
Target:  5'- gCCGGCGUaucaGCCGcAACGCcgGCAGc- -3'
miRNA:   3'- -GGCCGCGag--CGGU-UUGCGuaCGUCua -5'
17192 5' -56.3 NC_004333.2 + 16672 0.68 0.467926
Target:  5'- cCCGGUGCU-GCaccGCGCGgUGCGGAa -3'
miRNA:   3'- -GGCCGCGAgCGguuUGCGU-ACGUCUa -5'
17192 5' -56.3 NC_004333.2 + 28911 0.68 0.498906
Target:  5'- gCCGGCGCauacUUGCCGucgguGCGUA-GCGGGc -3'
miRNA:   3'- -GGCCGCG----AGCGGUu----UGCGUaCGUCUa -5'
17192 5' -56.3 NC_004333.2 + 5066 0.73 0.236858
Target:  5'- gUCGGCGCggCGCUGAACaGCGUcaGCAGGUg -3'
miRNA:   3'- -GGCCGCGa-GCGGUUUG-CGUA--CGUCUA- -5'
17192 5' -56.3 NC_004333.2 + 37408 0.71 0.314174
Target:  5'- gUCGGCGCUCGCgGuuuGCGCggcGUGCAc-- -3'
miRNA:   3'- -GGCCGCGAGCGgUu--UGCG---UACGUcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.