miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17193 5' -56.9 NC_004333.2 + 47792 0.66 0.634014
Target:  5'- gGCCacgGCGCGcGAcgugcCGGCGAGCGUg-- -3'
miRNA:   3'- -CGGa--CGCGCuCUa----GCUGCUCGCAgca -5'
17193 5' -56.9 NC_004333.2 + 13663 0.66 0.634014
Target:  5'- -gCUGCGCGAGca-GcACGAGCGUa-- -3'
miRNA:   3'- cgGACGCGCUCuagC-UGCUCGCAgca -5'
17193 5' -56.9 NC_004333.2 + 8961 0.66 0.634014
Target:  5'- cGCgUGCGCGggcuGGAUCGugGGccguGCG-CGg -3'
miRNA:   3'- -CGgACGCGC----UCUAGCugCU----CGCaGCa -5'
17193 5' -56.9 NC_004333.2 + 45479 0.66 0.627476
Target:  5'- aCCUGCcgcccgagcaggucaGCGAGAUCGucuacaacugGCGGGCGgggCGc -3'
miRNA:   3'- cGGACG---------------CGCUCUAGC----------UGCUCGCa--GCa -5'
17193 5' -56.9 NC_004333.2 + 46840 0.66 0.623118
Target:  5'- uGCCgagcaGCGCGgcGGAcacuUCGACGccgaguGCGUCGg -3'
miRNA:   3'- -CGGa----CGCGC--UCU----AGCUGCu-----CGCAGCa -5'
17193 5' -56.9 NC_004333.2 + 38277 0.66 0.623118
Target:  5'- uGCCUGUucGaCGAGAUCGAUGcacGCG-CGa -3'
miRNA:   3'- -CGGACG--C-GCUCUAGCUGCu--CGCaGCa -5'
17193 5' -56.9 NC_004333.2 + 27423 0.66 0.623118
Target:  5'- cCCUGCGCGg---CGACG-GCuGUCGa -3'
miRNA:   3'- cGGACGCGCucuaGCUGCuCG-CAGCa -5'
17193 5' -56.9 NC_004333.2 + 25743 0.66 0.61223
Target:  5'- gGCCggucgGCGUGaAGGUCGguuGCGGGaCGUUGg -3'
miRNA:   3'- -CGGa----CGCGC-UCUAGC---UGCUC-GCAGCa -5'
17193 5' -56.9 NC_004333.2 + 37894 0.66 0.61223
Target:  5'- gGCCUGCucGCGAuucgcgcucUCGGCGAcgcaaacugccuGCGUCGUg -3'
miRNA:   3'- -CGGACG--CGCUcu-------AGCUGCU------------CGCAGCA- -5'
17193 5' -56.9 NC_004333.2 + 41018 0.66 0.61223
Target:  5'- cGCCUGcCGUGcGAcCGACuguGGCGUCGc -3'
miRNA:   3'- -CGGAC-GCGCuCUaGCUGc--UCGCAGCa -5'
17193 5' -56.9 NC_004333.2 + 19728 0.66 0.61223
Target:  5'- uCCUGUaucuccgugGCGAGcuGUUGACGgccAGCGUCGg -3'
miRNA:   3'- cGGACG---------CGCUC--UAGCUGC---UCGCAGCa -5'
17193 5' -56.9 NC_004333.2 + 3058 0.66 0.605705
Target:  5'- cGCCg--GCGAGcgucuacggcauuccGUUGACGGGCGUCa- -3'
miRNA:   3'- -CGGacgCGCUC---------------UAGCUGCUCGCAGca -5'
17193 5' -56.9 NC_004333.2 + 38230 0.66 0.60136
Target:  5'- aGCg-GCGUGccaAGAUCGGCGgccgggucGGCGUCGa -3'
miRNA:   3'- -CGgaCGCGC---UCUAGCUGC--------UCGCAGCa -5'
17193 5' -56.9 NC_004333.2 + 23718 0.66 0.590515
Target:  5'- gGCUcGCGCGAGuugCGuCGGaCGUCGUa -3'
miRNA:   3'- -CGGaCGCGCUCua-GCuGCUcGCAGCA- -5'
17193 5' -56.9 NC_004333.2 + 17148 0.66 0.590515
Target:  5'- cGCaUGCGCGAGGaagUCG-UGcGCGUCGa -3'
miRNA:   3'- -CGgACGCGCUCU---AGCuGCuCGCAGCa -5'
17193 5' -56.9 NC_004333.2 + 20554 0.66 0.590515
Target:  5'- gGCC-GCGCcgcuGAUCGuCGGcGCGUCGg -3'
miRNA:   3'- -CGGaCGCGcu--CUAGCuGCU-CGCAGCa -5'
17193 5' -56.9 NC_004333.2 + 13832 0.66 0.579704
Target:  5'- cGCC-GCGCGAG--CGGCGcgcGGCGUCc- -3'
miRNA:   3'- -CGGaCGCGCUCuaGCUGC---UCGCAGca -5'
17193 5' -56.9 NC_004333.2 + 24531 0.67 0.568936
Target:  5'- aUCUGCGaaacgcuaauguUGAGAUUGGCGAuCGUCGg -3'
miRNA:   3'- cGGACGC------------GCUCUAGCUGCUcGCAGCa -5'
17193 5' -56.9 NC_004333.2 + 20615 0.67 0.568936
Target:  5'- gGCCUcGCGCagucGGGccaauUCGacGCGAGCGUCGc -3'
miRNA:   3'- -CGGA-CGCG----CUCu----AGC--UGCUCGCAGCa -5'
17193 5' -56.9 NC_004333.2 + 1504 0.67 0.558218
Target:  5'- -aCUGCGCGAGcgaCGGCGAGuCGgccugcagCGUg -3'
miRNA:   3'- cgGACGCGCUCua-GCUGCUC-GCa-------GCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.