miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17193 5' -56.9 NC_004333.2 + 45929 0.69 0.426419
Target:  5'- gGCCgcguUGCGCGAGAagcagcUCGuCGAGCGgaugUGUc -3'
miRNA:   3'- -CGG----ACGCGCUCU------AGCuGCUCGCa---GCA- -5'
17193 5' -56.9 NC_004333.2 + 38277 0.66 0.623118
Target:  5'- uGCCUGUucGaCGAGAUCGAUGcacGCG-CGa -3'
miRNA:   3'- -CGGACG--C-GCUCUAGCUGCu--CGCaGCa -5'
17193 5' -56.9 NC_004333.2 + 45479 0.66 0.627476
Target:  5'- aCCUGCcgcccgagcaggucaGCGAGAUCGucuacaacugGCGGGCGgggCGc -3'
miRNA:   3'- cGGACG---------------CGCUCUAGC----------UGCUCGCa--GCa -5'
17193 5' -56.9 NC_004333.2 + 8961 0.66 0.634014
Target:  5'- cGCgUGCGCGggcuGGAUCGugGGccguGCG-CGg -3'
miRNA:   3'- -CGgACGCGC----UCUAGCugCU----CGCaGCa -5'
17193 5' -56.9 NC_004333.2 + 1504 0.67 0.558218
Target:  5'- -aCUGCGCGAGcgaCGGCGAGuCGgccugcagCGUg -3'
miRNA:   3'- cgGACGCGCUCua-GCUGCUC-GCa-------GCA- -5'
17193 5' -56.9 NC_004333.2 + 37744 1.09 0.000688
Target:  5'- cGCCUGCGCGAGAUCGACGAGCGUCGUu -3'
miRNA:   3'- -CGGACGCGCUCUAGCUGCUCGCAGCA- -5'
17193 5' -56.9 NC_004333.2 + 33329 0.72 0.274145
Target:  5'- cGCCacggaucagauucguUGCGCGAGAaCGGCGcGCcGUCGUg -3'
miRNA:   3'- -CGG---------------ACGCGCUCUaGCUGCuCG-CAGCA- -5'
17193 5' -56.9 NC_004333.2 + 23350 0.71 0.314915
Target:  5'- cGCCUGCGCGu--UUG-UGAGCGUCa- -3'
miRNA:   3'- -CGGACGCGCucuAGCuGCUCGCAGca -5'
17193 5' -56.9 NC_004333.2 + 32272 0.71 0.322661
Target:  5'- aGCCUuccggaugGCGCGGGucggcggcgauGUCGACGuGCGUCa- -3'
miRNA:   3'- -CGGA--------CGCGCUC-----------UAGCUGCuCGCAGca -5'
17193 5' -56.9 NC_004333.2 + 37894 0.66 0.61223
Target:  5'- gGCCUGCucGCGAuucgcgcucUCGGCGAcgcaaacugccuGCGUCGUg -3'
miRNA:   3'- -CGGACG--CGCUcu-------AGCUGCU------------CGCAGCA- -5'
17193 5' -56.9 NC_004333.2 + 17148 0.66 0.590515
Target:  5'- cGCaUGCGCGAGGaagUCG-UGcGCGUCGa -3'
miRNA:   3'- -CGgACGCGCUCU---AGCuGCuCGCAGCa -5'
17193 5' -56.9 NC_004333.2 + 23718 0.66 0.590515
Target:  5'- gGCUcGCGCGAGuugCGuCGGaCGUCGUa -3'
miRNA:   3'- -CGGaCGCGCUCua-GCuGCUcGCAGCA- -5'
17193 5' -56.9 NC_004333.2 + 2961 0.68 0.495367
Target:  5'- -gCUGCGCGAGcgUGACGccCGUCa- -3'
miRNA:   3'- cgGACGCGCUCuaGCUGCucGCAGca -5'
17193 5' -56.9 NC_004333.2 + 20554 0.66 0.590515
Target:  5'- gGCC-GCGCcgcuGAUCGuCGGcGCGUCGg -3'
miRNA:   3'- -CGGaCGCGcu--CUAGCuGCU-CGCAGCa -5'
17193 5' -56.9 NC_004333.2 + 9524 0.67 0.526441
Target:  5'- gGCUUGCGCGuuuuGcUCGACGAGCu---- -3'
miRNA:   3'- -CGGACGCGCu---CuAGCUGCUCGcagca -5'
17193 5' -56.9 NC_004333.2 + 20615 0.67 0.568936
Target:  5'- gGCCUcGCGCagucGGGccaauUCGacGCGAGCGUCGc -3'
miRNA:   3'- -CGGA-CGCG----CUCu----AGC--UGCUCGCAGCa -5'
17193 5' -56.9 NC_004333.2 + 25743 0.66 0.61223
Target:  5'- gGCCggucgGCGUGaAGGUCGguuGCGGGaCGUUGg -3'
miRNA:   3'- -CGGa----CGCGC-UCUAGC---UGCUC-GCAGCa -5'
17193 5' -56.9 NC_004333.2 + 27423 0.66 0.623118
Target:  5'- cCCUGCGCGg---CGACG-GCuGUCGa -3'
miRNA:   3'- cGGACGCGCucuaGCUGCuCG-CAGCa -5'
17193 5' -56.9 NC_004333.2 + 36308 0.67 0.526441
Target:  5'- cGCC-GCcCGAGuaGUCGcCGGGCGUCGc -3'
miRNA:   3'- -CGGaCGcGCUC--UAGCuGCUCGCAGCa -5'
17193 5' -56.9 NC_004333.2 + 24531 0.67 0.568936
Target:  5'- aUCUGCGaaacgcuaauguUGAGAUUGGCGAuCGUCGg -3'
miRNA:   3'- cGGACGC------------GCUCUAGCUGCUcGCAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.