miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17194 3' -54.1 NC_004333.2 + 30170 0.68 0.668848
Target:  5'- cGCGgGUCGCGcAUCGAcgcGUuCCGucGGCGCu -3'
miRNA:   3'- -CGCgCAGCGC-UAGCU---CAuGGU--CUGUG- -5'
17194 3' -54.1 NC_004333.2 + 1895 0.68 0.657777
Target:  5'- gGCgGgGUCGcCGAUCaggaAGUACCAGcCACg -3'
miRNA:   3'- -CG-CgCAGC-GCUAGc---UCAUGGUCuGUG- -5'
17194 3' -54.1 NC_004333.2 + 37928 0.68 0.657777
Target:  5'- -gGCcUCGgGcUCGAGU-CCGGACGCg -3'
miRNA:   3'- cgCGcAGCgCuAGCUCAuGGUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 20975 0.68 0.640016
Target:  5'- cGCGCGgCGCGggCGAGUgggugcguuucgagcGCguGGCAg -3'
miRNA:   3'- -CGCGCaGCGCuaGCUCA---------------UGguCUGUg -5'
17194 3' -54.1 NC_004333.2 + 37252 0.68 0.635571
Target:  5'- cGCGCGUCGUGAgcggCGuGUcGCC--GCGCu -3'
miRNA:   3'- -CGCGCAGCGCUa---GCuCA-UGGucUGUG- -5'
17194 3' -54.1 NC_004333.2 + 28889 0.68 0.624458
Target:  5'- cGCGCGaUCGCGcUCGGcgcagGCCGG-CGCa -3'
miRNA:   3'- -CGCGC-AGCGCuAGCUca---UGGUCuGUG- -5'
17194 3' -54.1 NC_004333.2 + 43725 0.68 0.623347
Target:  5'- aGCuuGUUGCGAUCcuGGUggugcagGCCGGACGCa -3'
miRNA:   3'- -CGcgCAGCGCUAGc-UCA-------UGGUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 11227 0.68 0.622235
Target:  5'- gGCGCGgcuccuugccgGCGcUCGAGUgcuGCCAGACGg -3'
miRNA:   3'- -CGCGCag---------CGCuAGCUCA---UGGUCUGUg -5'
17194 3' -54.1 NC_004333.2 + 35690 0.69 0.602262
Target:  5'- aCGCccuucaGUCGCGAacgCGAGUGucggcUCAGGCACa -3'
miRNA:   3'- cGCG------CAGCGCUa--GCUCAU-----GGUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 12753 0.69 0.591199
Target:  5'- cGCGCGcaCGUaGUCG--UACCAGACGCg -3'
miRNA:   3'- -CGCGCa-GCGcUAGCucAUGGUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 28303 0.69 0.580171
Target:  5'- cGCGCGUCaCGGUCacGUGacgcgcCCGGACGCg -3'
miRNA:   3'- -CGCGCAGcGCUAGcuCAU------GGUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 46200 0.69 0.569186
Target:  5'- gGCGCGucUCGCgccgGAUC-AGcGCCAGGCGCu -3'
miRNA:   3'- -CGCGC--AGCG----CUAGcUCaUGGUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 13210 0.69 0.569186
Target:  5'- gGCGCGUCGCGuggacuUCG-GUGCC-GAuCAUc -3'
miRNA:   3'- -CGCGCAGCGCu-----AGCuCAUGGuCU-GUG- -5'
17194 3' -54.1 NC_004333.2 + 46513 0.69 0.558254
Target:  5'- aGCGUGUC-CGcu--GGUACCGGACACu -3'
miRNA:   3'- -CGCGCAGcGCuagcUCAUGGUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 6710 0.7 0.536578
Target:  5'- aGCGCGcugccgagCGCGAUCGAGUugauuACCugcgacugcGGCGCu -3'
miRNA:   3'- -CGCGCa-------GCGCUAGCUCA-----UGGu--------CUGUG- -5'
17194 3' -54.1 NC_004333.2 + 28181 0.7 0.536578
Target:  5'- cGCGCGUUGaGAuuuUCGGcGUGCCGcucGACACg -3'
miRNA:   3'- -CGCGCAGCgCU---AGCU-CAUGGU---CUGUG- -5'
17194 3' -54.1 NC_004333.2 + 14967 0.7 0.514143
Target:  5'- cGCGCGUCGaugauaccgacguCGAUCGAGaaGCCGGuuaGCg -3'
miRNA:   3'- -CGCGCAGC-------------GCUAGCUCa-UGGUCug-UG- -5'
17194 3' -54.1 NC_004333.2 + 6851 0.7 0.504644
Target:  5'- cGCGCuGUCguauGCGAUCGGcUACCucgAGGCGCg -3'
miRNA:   3'- -CGCG-CAG----CGCUAGCUcAUGG---UCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 9733 0.7 0.49418
Target:  5'- cCGCGUCgGCGAcaUGAGcGCCGGAUGCg -3'
miRNA:   3'- cGCGCAG-CGCUa-GCUCaUGGUCUGUG- -5'
17194 3' -54.1 NC_004333.2 + 25940 0.71 0.463409
Target:  5'- cGCGCGgCGCGAUgcCGGcgGCCAGuACGCg -3'
miRNA:   3'- -CGCGCaGCGCUA--GCUcaUGGUC-UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.