miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17195 3' -52.1 NC_004333.2 + 25627 0.66 0.890122
Target:  5'- cGCAGcUgaUCGCcaaugUCGAccCGCUGACCu -3'
miRNA:   3'- -CGUCaAgaAGCGca---AGCU--GCGGCUGG- -5'
17195 3' -52.1 NC_004333.2 + 46835 0.66 0.890122
Target:  5'- aGCAGcgCg--GCGgacacUUCGACGCCGAgUg -3'
miRNA:   3'- -CGUCaaGaagCGC-----AAGCUGCGGCUgG- -5'
17195 3' -52.1 NC_004333.2 + 2529 0.66 0.882621
Target:  5'- cGCGGcUUCgUUCggcgcgcagGUGUUCGccGCGCCGuACCa -3'
miRNA:   3'- -CGUC-AAG-AAG---------CGCAAGC--UGCGGC-UGG- -5'
17195 3' -52.1 NC_004333.2 + 1867 0.66 0.880318
Target:  5'- uGCGGUUCUgaCGCGccuggcccggauuggCGGgguCGCCGAUCa -3'
miRNA:   3'- -CGUCAAGAa-GCGCaa-------------GCU---GCGGCUGG- -5'
17195 3' -52.1 NC_004333.2 + 33279 0.66 0.874855
Target:  5'- -aAGUUCagccgagCGCGcgCGuuGCGUCGGCCg -3'
miRNA:   3'- cgUCAAGaa-----GCGCaaGC--UGCGGCUGG- -5'
17195 3' -52.1 NC_004333.2 + 3477 0.66 0.874855
Target:  5'- aGCuGUUCUUcaccgaagcuccCGCGacgacggCGACGCCGGUCg -3'
miRNA:   3'- -CGuCAAGAA------------GCGCaa-----GCUGCGGCUGG- -5'
17195 3' -52.1 NC_004333.2 + 30380 0.66 0.86683
Target:  5'- gGCGGguggugUCGCaGgcgCGACGgCGGCCa -3'
miRNA:   3'- -CGUCaaga--AGCG-Caa-GCUGCgGCUGG- -5'
17195 3' -52.1 NC_004333.2 + 2107 0.66 0.86683
Target:  5'- cGCGGgcgUCgaCGUGaUCGAUG-CGGCCg -3'
miRNA:   3'- -CGUCa--AGaaGCGCaAGCUGCgGCUGG- -5'
17195 3' -52.1 NC_004333.2 + 12194 0.66 0.86683
Target:  5'- cCGGcgUCUcaUUGCcUUCGACcuuGCCGGCCg -3'
miRNA:   3'- cGUCa-AGA--AGCGcAAGCUG---CGGCUGG- -5'
17195 3' -52.1 NC_004333.2 + 10212 0.66 0.858554
Target:  5'- cGCGGUcgCgaaGUGgUCGGCuauGCCGACCu -3'
miRNA:   3'- -CGUCAa-GaagCGCaAGCUG---CGGCUGG- -5'
17195 3' -52.1 NC_004333.2 + 32141 0.66 0.858554
Target:  5'- aGCAcgUCgaaCGCGgcgacugUCGGCagGCCGGCCa -3'
miRNA:   3'- -CGUcaAGaa-GCGCa------AGCUG--CGGCUGG- -5'
17195 3' -52.1 NC_004333.2 + 26601 0.66 0.850034
Target:  5'- uGCAGUUCgcCGCaccugUCGGCGC--GCCg -3'
miRNA:   3'- -CGUCAAGaaGCGca---AGCUGCGgcUGG- -5'
17195 3' -52.1 NC_004333.2 + 36187 0.66 0.850034
Target:  5'- cGCAGgccgUCgccaaccUUGCGUaCGugGCUGGCg -3'
miRNA:   3'- -CGUCa---AGa------AGCGCAaGCugCGGCUGg -5'
17195 3' -52.1 NC_004333.2 + 12161 0.66 0.850034
Target:  5'- -gGGUUCUUucaCGCGUUCGuuGCGCacuuaGAgCCg -3'
miRNA:   3'- cgUCAAGAA---GCGCAAGC--UGCGg----CU-GG- -5'
17195 3' -52.1 NC_004333.2 + 12157 0.66 0.850034
Target:  5'- cCAGUUUccucUCGUGUcUCG-CGCCGAgCCg -3'
miRNA:   3'- cGUCAAGa---AGCGCA-AGCuGCGGCU-GG- -5'
17195 3' -52.1 NC_004333.2 + 15878 0.66 0.847432
Target:  5'- cGCAGgcgUCggCGCGaUCGAaCGCuucgagaucgaucaCGACCu -3'
miRNA:   3'- -CGUCa--AGaaGCGCaAGCU-GCG--------------GCUGG- -5'
17195 3' -52.1 NC_004333.2 + 1986 0.67 0.841279
Target:  5'- uGCgAGUUCguaGCGUU--ACGCCGGCg -3'
miRNA:   3'- -CG-UCAAGaagCGCAAgcUGCGGCUGg -5'
17195 3' -52.1 NC_004333.2 + 27218 0.67 0.841279
Target:  5'- cGCGGUacaUCgccgUCGUGaUCGcagcgucugccuGCGCCGACg -3'
miRNA:   3'- -CGUCA---AGa---AGCGCaAGC------------UGCGGCUGg -5'
17195 3' -52.1 NC_004333.2 + 25743 0.67 0.841279
Target:  5'- uCAGgUCgcCGCGUUCG-CGaCGGCCg -3'
miRNA:   3'- cGUCaAGaaGCGCAAGCuGCgGCUGG- -5'
17195 3' -52.1 NC_004333.2 + 30457 0.67 0.841279
Target:  5'- cCGGUcgCUUCGaCGUUCGGCaucgcgGUCGACg -3'
miRNA:   3'- cGUCAa-GAAGC-GCAAGCUG------CGGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.