miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17195 3' -52.1 NC_004333.2 + 25743 0.67 0.841279
Target:  5'- uCAGgUCgcCGCGUUCG-CGaCGGCCg -3'
miRNA:   3'- cGUCaAGaaGCGCAAGCuGCgGCUGG- -5'
17195 3' -52.1 NC_004333.2 + 12636 0.67 0.835917
Target:  5'- -gAGUUCgcgaagCGCGUuccauugccauuugaUCGACggGUCGACCg -3'
miRNA:   3'- cgUCAAGaa----GCGCA---------------AGCUG--CGGCUGG- -5'
17195 3' -52.1 NC_004333.2 + 13746 0.67 0.832298
Target:  5'- -aAG-UCgagCGCGUagGACGCCGcgcGCCg -3'
miRNA:   3'- cgUCaAGaa-GCGCAagCUGCGGC---UGG- -5'
17195 3' -52.1 NC_004333.2 + 3552 0.67 0.832298
Target:  5'- cGCGGUgccgCgcagCGCG-UCG--GCCGACCa -3'
miRNA:   3'- -CGUCAa---Gaa--GCGCaAGCugCGGCUGG- -5'
17195 3' -52.1 NC_004333.2 + 30058 0.67 0.832298
Target:  5'- -uGGUgc-UCGCGcUCGGCGCCGguggcagcgcgGCCg -3'
miRNA:   3'- cgUCAagaAGCGCaAGCUGCGGC-----------UGG- -5'
17195 3' -52.1 NC_004333.2 + 29256 0.67 0.832298
Target:  5'- cGCGGg--UUCGUGcagCGGC-CCGACCa -3'
miRNA:   3'- -CGUCaagAAGCGCaa-GCUGcGGCUGG- -5'
17195 3' -52.1 NC_004333.2 + 22513 0.67 0.832298
Target:  5'- gGCAGgUCgccaUCGCGUuccUCGGCGguCUGAUCg -3'
miRNA:   3'- -CGUCaAGa---AGCGCA---AGCUGC--GGCUGG- -5'
17195 3' -52.1 NC_004333.2 + 26673 0.67 0.832298
Target:  5'- cCAGcUUUgUCGUGaaCG-CGCCGACCa -3'
miRNA:   3'- cGUC-AAGaAGCGCaaGCuGCGGCUGG- -5'
17195 3' -52.1 NC_004333.2 + 7400 0.67 0.823099
Target:  5'- cGCAGgUCgcCGUGUccuugccuUCGACGCgCGGCg -3'
miRNA:   3'- -CGUCaAGaaGCGCA--------AGCUGCG-GCUGg -5'
17195 3' -52.1 NC_004333.2 + 21509 0.67 0.823099
Target:  5'- aCAGUUCcgucCGCGUcCuGCGCCGcCCa -3'
miRNA:   3'- cGUCAAGaa--GCGCAaGcUGCGGCuGG- -5'
17195 3' -52.1 NC_004333.2 + 8759 0.67 0.823099
Target:  5'- uGUAGaUCaUCGgGUUCGAgcuggcgaaguCGCCGGCa -3'
miRNA:   3'- -CGUCaAGaAGCgCAAGCU-----------GCGGCUGg -5'
17195 3' -52.1 NC_004333.2 + 9784 0.67 0.823099
Target:  5'- cGCGGcgUUUCGCGaaccgCGuGCGCCGAauCCa -3'
miRNA:   3'- -CGUCaaGAAGCGCaa---GC-UGCGGCU--GG- -5'
17195 3' -52.1 NC_004333.2 + 31537 0.67 0.813694
Target:  5'- cCAGUUCgucgacgaugUUUGCGUUCGcgGCGUCuGCCa -3'
miRNA:   3'- cGUCAAG----------AAGCGCAAGC--UGCGGcUGG- -5'
17195 3' -52.1 NC_004333.2 + 3090 0.67 0.813694
Target:  5'- gGCGa-UCUUCGCcucGUUCGacagcGCGCCGAaCCa -3'
miRNA:   3'- -CGUcaAGAAGCG---CAAGC-----UGCGGCU-GG- -5'
17195 3' -52.1 NC_004333.2 + 21453 0.67 0.813694
Target:  5'- aCGGaaCUguacaaGUGUUCGaAUGCCGGCCg -3'
miRNA:   3'- cGUCaaGAag----CGCAAGC-UGCGGCUGG- -5'
17195 3' -52.1 NC_004333.2 + 32617 0.67 0.813694
Target:  5'- cGCAGUgaUCgacgcgagCGCGccgcgCGACGUCGGCa -3'
miRNA:   3'- -CGUCA--AGaa------GCGCaa---GCUGCGGCUGg -5'
17195 3' -52.1 NC_004333.2 + 3173 0.67 0.812743
Target:  5'- -uGGUUCggCGCGcugUCGAacgaggcgaagauCGCCGACg -3'
miRNA:   3'- cgUCAAGaaGCGCa--AGCU-------------GCGGCUGg -5'
17195 3' -52.1 NC_004333.2 + 21164 0.67 0.804093
Target:  5'- uGguGcgCUUCGCGcugcCGcAgGCCGGCCu -3'
miRNA:   3'- -CguCaaGAAGCGCaa--GC-UgCGGCUGG- -5'
17195 3' -52.1 NC_004333.2 + 38374 0.68 0.794306
Target:  5'- cGCuGUcgCgugUCGgGUgcgccggcgUGACGCCGGCCa -3'
miRNA:   3'- -CGuCAa-Ga--AGCgCAa--------GCUGCGGCUGG- -5'
17195 3' -52.1 NC_004333.2 + 20304 0.68 0.784345
Target:  5'- uGUAGgccagUCGCGgUCGAuCGCCG-CCa -3'
miRNA:   3'- -CGUCaaga-AGCGCaAGCU-GCGGCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.