miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17195 3' -52.1 NC_004333.2 + 38131 1.14 0.00105
Target:  5'- aGCAGUUCUUCGCGUUCGACGCCGACCc -3'
miRNA:   3'- -CGUCAAGAAGCGCAAGCUGCGGCUGG- -5'
17195 3' -52.1 NC_004333.2 + 2637 0.68 0.763946
Target:  5'- cGCGGUUCaUCGCGcuugccggCGuaucagccgcaACGCCGGCa -3'
miRNA:   3'- -CGUCAAGaAGCGCaa------GC-----------UGCGGCUGg -5'
17195 3' -52.1 NC_004333.2 + 44949 0.68 0.784345
Target:  5'- gGCAGcuaucCUgcgCGCGcacgUCGGCGgCCGACUg -3'
miRNA:   3'- -CGUCaa---GAa--GCGCa---AGCUGC-GGCUGG- -5'
17195 3' -52.1 NC_004333.2 + 1867 0.66 0.880318
Target:  5'- uGCGGUUCUgaCGCGccuggcccggauuggCGGgguCGCCGAUCa -3'
miRNA:   3'- -CGUCAAGAa-GCGCaa-------------GCU---GCGGCUGG- -5'
17195 3' -52.1 NC_004333.2 + 5471 0.73 0.501752
Target:  5'- cGCAGccaCUUCGC-UUCGGCGUagaCGACCu -3'
miRNA:   3'- -CGUCaa-GAAGCGcAAGCUGCG---GCUGG- -5'
17195 3' -52.1 NC_004333.2 + 13206 0.72 0.533777
Target:  5'- uGCAGgcgCgUCGCGUggacuUCGGUGCCGAUCa -3'
miRNA:   3'- -CGUCaa-GaAGCGCA-----AGCUGCGGCUGG- -5'
17195 3' -52.1 NC_004333.2 + 8931 0.71 0.5886
Target:  5'- cGCGGcUUCgUUCGCGc-CGGCGCUGuCCa -3'
miRNA:   3'- -CGUC-AAG-AAGCGCaaGCUGCGGCuGG- -5'
17195 3' -52.1 NC_004333.2 + 30356 0.71 0.599711
Target:  5'- aCAGUUUcaCGCgGUUCGGauCGUCGACCg -3'
miRNA:   3'- cGUCAAGaaGCG-CAAGCU--GCGGCUGG- -5'
17195 3' -52.1 NC_004333.2 + 1113 0.69 0.721572
Target:  5'- cGCAG-UCgcgCGCGaagUCGGUGCCGugCu -3'
miRNA:   3'- -CGUCaAGaa-GCGCa--AGCUGCGGCugG- -5'
17195 3' -52.1 NC_004333.2 + 7838 0.68 0.753532
Target:  5'- cCAGaUCgaCGCGgcCuGCGCCGGCCa -3'
miRNA:   3'- cGUCaAGaaGCGCaaGcUGCGGCUGG- -5'
17195 3' -52.1 NC_004333.2 + 15784 0.69 0.746165
Target:  5'- aGCAGgUCgugaucgaucucgaaGCGUUCGaucGCGCCGACg -3'
miRNA:   3'- -CGUCaAGaag------------CGCAAGC---UGCGGCUGg -5'
17195 3' -52.1 NC_004333.2 + 10700 0.69 0.699788
Target:  5'- uCGGUUCgaCGCuGUUCGACGCgauUGACg -3'
miRNA:   3'- cGUCAAGaaGCG-CAAGCUGCG---GCUGg -5'
17195 3' -52.1 NC_004333.2 + 19481 0.78 0.278282
Target:  5'- cCAGUUCUaUGCGaUCGGCGCUGGCg -3'
miRNA:   3'- cGUCAAGAaGCGCaAGCUGCGGCUGg -5'
17195 3' -52.1 NC_004333.2 + 441 0.68 0.753532
Target:  5'- gGCAGUgcggaacgcaaUCUUCacgGCGUUUGugcCGCCGcCCg -3'
miRNA:   3'- -CGUCA-----------AGAAG---CGCAAGCu--GCGGCuGG- -5'
17195 3' -52.1 NC_004333.2 + 15177 0.74 0.420987
Target:  5'- gGCAGUgCguaggUCGCGUUCGcaaucCGCaCGGCCg -3'
miRNA:   3'- -CGUCAaGa----AGCGCAAGCu----GCG-GCUGG- -5'
17195 3' -52.1 NC_004333.2 + 17272 0.7 0.6555
Target:  5'- uGCAGauugcCUUCGaCGUga-ACGCCGGCCg -3'
miRNA:   3'- -CGUCaa---GAAGC-GCAagcUGCGGCUGG- -5'
17195 3' -52.1 NC_004333.2 + 25286 0.68 0.753532
Target:  5'- aGCGuGUUCggcgUCGCaaccgggcCGACGCCGGCg -3'
miRNA:   3'- -CGU-CAAGa---AGCGcaa-----GCUGCGGCUGg -5'
17195 3' -52.1 NC_004333.2 + 22193 0.68 0.774221
Target:  5'- gGCGGUUCggcggcUGCGgccugcUCGAUGCCGAg- -3'
miRNA:   3'- -CGUCAAGaa----GCGCa-----AGCUGCGGCUgg -5'
17195 3' -52.1 NC_004333.2 + 19628 0.74 0.420987
Target:  5'- cGCGGcgag-CGCGgcCGACGCUGGCCg -3'
miRNA:   3'- -CGUCaagaaGCGCaaGCUGCGGCUGG- -5'
17195 3' -52.1 NC_004333.2 + 7241 0.72 0.541357
Target:  5'- gGCGGUUUcUCGCGgcaacgccugacgaUUaGACGCCGAUCa -3'
miRNA:   3'- -CGUCAAGaAGCGC--------------AAgCUGCGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.