miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17195 5' -60.5 NC_004333.2 + 2934 0.66 0.391368
Target:  5'- --uGCgACGUCGUUCGCGAacGCCGCa -3'
miRNA:   3'- aacCG-UGCGGCGAGCGUUacCGGCGg -5'
17195 5' -60.5 NC_004333.2 + 13199 0.66 0.391368
Target:  5'- -cGGCaucagcaugACGCaGCUCGCGAUG-CCGUa -3'
miRNA:   3'- aaCCG---------UGCGgCGAGCGUUACcGGCGg -5'
17195 5' -60.5 NC_004333.2 + 17044 0.66 0.391368
Target:  5'- -aGGCcaaugGCGUCauGCUCGCGGUGuuccaGCCGCg -3'
miRNA:   3'- aaCCG-----UGCGG--CGAGCGUUAC-----CGGCGg -5'
17195 5' -60.5 NC_004333.2 + 671 0.66 0.390474
Target:  5'- -aGGCACGguagugcCCGUgcucggugagCGCGAUcGuGCCGCCg -3'
miRNA:   3'- aaCCGUGC-------GGCGa---------GCGUUA-C-CGGCGG- -5'
17195 5' -60.5 NC_004333.2 + 11833 0.66 0.38869
Target:  5'- -cGGCGCGCUccaGCUUGCGccGGUacaucgcuuccgucUGCCg -3'
miRNA:   3'- aaCCGUGCGG---CGAGCGUuaCCG--------------GCGG- -5'
17195 5' -60.5 NC_004333.2 + 37179 0.66 0.382489
Target:  5'- -cGGCgacACGCCGCUCaCGAc-GCgCGCCg -3'
miRNA:   3'- aaCCG---UGCGGCGAGcGUUacCG-GCGG- -5'
17195 5' -60.5 NC_004333.2 + 5111 0.66 0.382489
Target:  5'- -cGGCcaacaGCCgGC-CGCc-UGGCCGCCu -3'
miRNA:   3'- aaCCGug---CGG-CGaGCGuuACCGGCGG- -5'
17195 5' -60.5 NC_004333.2 + 29886 0.66 0.382489
Target:  5'- -cGGCgaaGCGCUGCgCGaucgGGCCGCg -3'
miRNA:   3'- aaCCG---UGCGGCGaGCguuaCCGGCGg -5'
17195 5' -60.5 NC_004333.2 + 45045 0.66 0.382489
Target:  5'- -cGGCGCGCaaaCGCUgaacacCGCGc-GGCCGCg -3'
miRNA:   3'- aaCCGUGCG---GCGA------GCGUuaCCGGCGg -5'
17195 5' -60.5 NC_004333.2 + 17213 0.66 0.382489
Target:  5'- -gGGCGaucacUGCCGCUacUGCAA-GGCaaaGCCg -3'
miRNA:   3'- aaCCGU-----GCGGCGA--GCGUUaCCGg--CGG- -5'
17195 5' -60.5 NC_004333.2 + 21861 0.66 0.379852
Target:  5'- -cGGCGCGCgcuacaagcugguuCGCUgCGCAuagccccaauUGGgCGCCg -3'
miRNA:   3'- aaCCGUGCG--------------GCGA-GCGUu---------ACCgGCGG- -5'
17195 5' -60.5 NC_004333.2 + 27729 0.66 0.373746
Target:  5'- --uGCGCGaUCGCggCGCGAaucuggucGGCCGCCg -3'
miRNA:   3'- aacCGUGC-GGCGa-GCGUUa-------CCGGCGG- -5'
17195 5' -60.5 NC_004333.2 + 23182 0.66 0.373746
Target:  5'- -cGGUGCGCCGuUUUGCGgaaucGUGauacccguacccGCCGCCg -3'
miRNA:   3'- aaCCGUGCGGC-GAGCGU-----UAC------------CGGCGG- -5'
17195 5' -60.5 NC_004333.2 + 28867 0.66 0.373746
Target:  5'- -cGGCGCGCucaagCGCUCGU----GCCGCg -3'
miRNA:   3'- aaCCGUGCG-----GCGAGCGuuacCGGCGg -5'
17195 5' -60.5 NC_004333.2 + 39012 0.66 0.373746
Target:  5'- -cGGCGauUGCCGgUCGCGucGUGGuUCGUCu -3'
miRNA:   3'- aaCCGU--GCGGCgAGCGU--UACC-GGCGG- -5'
17195 5' -60.5 NC_004333.2 + 20715 0.66 0.373746
Target:  5'- cUGGCgcaGCGCCguugcgacGCUCGCGucgaauUGGCCcgacugcgcgagGCCg -3'
miRNA:   3'- aACCG---UGCGG--------CGAGCGUu-----ACCGG------------CGG- -5'
17195 5' -60.5 NC_004333.2 + 3663 0.66 0.373746
Target:  5'- -gGGCGaauacgauCGCCGCgauguggCGCAcuauGUGGUCgGCCg -3'
miRNA:   3'- aaCCGU--------GCGGCGa------GCGU----UACCGG-CGG- -5'
17195 5' -60.5 NC_004333.2 + 22754 0.66 0.360042
Target:  5'- gUGGCacgucgguuGCagucacguuucccaaGCCGUUCGCGcAUGGuuGCCu -3'
miRNA:   3'- aACCG---------UG---------------CGGCGAGCGU-UACCggCGG- -5'
17195 5' -60.5 NC_004333.2 + 41906 0.66 0.356671
Target:  5'- --uGCcCGaCCGCUCGCGGccGGgCGCCg -3'
miRNA:   3'- aacCGuGC-GGCGAGCGUUa-CCgGCGG- -5'
17195 5' -60.5 NC_004333.2 + 21300 0.66 0.356671
Target:  5'- -aGGCcCGUuccagaUGCgCGCGAcGGCCGCCc -3'
miRNA:   3'- aaCCGuGCG------GCGaGCGUUaCCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.