miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17195 5' -60.5 NC_004333.2 + 37976 0.66 0.356671
Target:  5'- uUUGGCGuCGCCGagagcgcgaaUCGCGAgcaGGCCGa- -3'
miRNA:   3'- -AACCGU-GCGGCg---------AGCGUUa--CCGGCgg -5'
17195 5' -60.5 NC_004333.2 + 21300 0.66 0.356671
Target:  5'- -aGGCcCGUuccagaUGCgCGCGAcGGCCGCCc -3'
miRNA:   3'- aaCCGuGCG------GCGaGCGUUaCCGGCGG- -5'
17195 5' -60.5 NC_004333.2 + 41906 0.66 0.356671
Target:  5'- --uGCcCGaCCGCUCGCGGccGGgCGCCg -3'
miRNA:   3'- aacCGuGC-GGCGAGCGUUa-CCgGCGG- -5'
17195 5' -60.5 NC_004333.2 + 47555 0.66 0.356671
Target:  5'- -cGGCGCcUCGUUCagcgcgGCAGUcGCCGCCg -3'
miRNA:   3'- aaCCGUGcGGCGAG------CGUUAcCGGCGG- -5'
17195 5' -60.5 NC_004333.2 + 5234 0.66 0.355832
Target:  5'- -aGGCgcaagcuGCGCUGCUCGaCAAcacgGGCgGCUc -3'
miRNA:   3'- aaCCG-------UGCGGCGAGC-GUUa---CCGgCGG- -5'
17195 5' -60.5 NC_004333.2 + 6567 0.66 0.348342
Target:  5'- -cGGCGCGCguaCGCgcgaaagccCGCAuc-GCCGCCa -3'
miRNA:   3'- aaCCGUGCG---GCGa--------GCGUuacCGGCGG- -5'
17195 5' -60.5 NC_004333.2 + 19359 0.66 0.348342
Target:  5'- -cGGC-CGUgugcuUGCUCGCGAgcagcaccaGGUCGCCg -3'
miRNA:   3'- aaCCGuGCG-----GCGAGCGUUa--------CCGGCGG- -5'
17195 5' -60.5 NC_004333.2 + 6659 0.67 0.343411
Target:  5'- -cGGCGCGCCGUggcgGCGAUgcgGGCuuucgcgcguacgcgCGCCg -3'
miRNA:   3'- aaCCGUGCGGCGag--CGUUA---CCG---------------GCGG- -5'
17195 5' -60.5 NC_004333.2 + 19935 0.67 0.340152
Target:  5'- -cGaGCGCGCCGggCgGCGA--GCCGCCg -3'
miRNA:   3'- aaC-CGUGCGGCgaG-CGUUacCGGCGG- -5'
17195 5' -60.5 NC_004333.2 + 4856 0.67 0.340152
Target:  5'- -cGcGCGCGCCGUgC-CGAUGccgcuGCCGCCg -3'
miRNA:   3'- aaC-CGUGCGGCGaGcGUUAC-----CGGCGG- -5'
17195 5' -60.5 NC_004333.2 + 30059 0.67 0.340152
Target:  5'- aUGGUgcucgcgcucgGCGCCGgUgGCAGcgcGGCCGCg -3'
miRNA:   3'- aACCG-----------UGCGGCgAgCGUUa--CCGGCGg -5'
17195 5' -60.5 NC_004333.2 + 18236 0.67 0.340152
Target:  5'- -cGGCACGCCGgcaaucggcuuCUUGCucGUGGCguucgucuugaUGCCg -3'
miRNA:   3'- aaCCGUGCGGC-----------GAGCGu-UACCG-----------GCGG- -5'
17195 5' -60.5 NC_004333.2 + 31321 0.67 0.340152
Target:  5'- -cGaGCACGgCGCcCGCAAUG-CCgGCCa -3'
miRNA:   3'- aaC-CGUGCgGCGaGCGUUACcGG-CGG- -5'
17195 5' -60.5 NC_004333.2 + 26807 0.67 0.33934
Target:  5'- -cGGgGCGCCGa-CGCAAugggucaaguuccUGGCCGgCg -3'
miRNA:   3'- aaCCgUGCGGCgaGCGUU-------------ACCGGCgG- -5'
17195 5' -60.5 NC_004333.2 + 28949 0.67 0.335305
Target:  5'- -aGGCACGCguUGUUCacgcggucgaacgcgGCGAUcaguugcgcGGCCGCCg -3'
miRNA:   3'- aaCCGUGCG--GCGAG---------------CGUUA---------CCGGCGG- -5'
17195 5' -60.5 NC_004333.2 + 19531 0.67 0.332102
Target:  5'- -gGGCAa-UCGUUCGCAagcugAUGGgCGCCg -3'
miRNA:   3'- aaCCGUgcGGCGAGCGU-----UACCgGCGG- -5'
17195 5' -60.5 NC_004333.2 + 22262 0.67 0.332102
Target:  5'- -aGGcCGCaGCCGCcgaacCGCcgccGGCCGCCg -3'
miRNA:   3'- aaCC-GUG-CGGCGa----GCGuua-CCGGCGG- -5'
17195 5' -60.5 NC_004333.2 + 21163 0.67 0.331305
Target:  5'- aUGGUgcgcuucGCGCUGC-CGCA--GGCCgGCCu -3'
miRNA:   3'- aACCG-------UGCGGCGaGCGUuaCCGG-CGG- -5'
17195 5' -60.5 NC_004333.2 + 43717 0.67 0.324193
Target:  5'- gUUGGCACcugaCGCgUCGCAacaAUGGcCCGCg -3'
miRNA:   3'- -AACCGUGcg--GCG-AGCGU---UACC-GGCGg -5'
17195 5' -60.5 NC_004333.2 + 28452 0.67 0.324193
Target:  5'- aUUGGUuC-CCGCacCGCcGUGGCUGCCu -3'
miRNA:   3'- -AACCGuGcGGCGa-GCGuUACCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.