miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17196 3' -58.6 NC_004333.2 + 1678 0.66 0.536736
Target:  5'- -cGAC-CCGGauGCGGUCGAaaACGGCg -3'
miRNA:   3'- caCUGcGGCCggUGCCAGUUc-UGCCG- -5'
17196 3' -58.6 NC_004333.2 + 8073 0.66 0.536736
Target:  5'- -cGACGCUGGUCGCGGcguUCAucACcGCa -3'
miRNA:   3'- caCUGCGGCCGGUGCC---AGUucUGcCG- -5'
17196 3' -58.6 NC_004333.2 + 12290 0.66 0.536736
Target:  5'- gGUGAuuggggguUGCCGGCCGgcaaGGUCGAa--GGCa -3'
miRNA:   3'- -CACU--------GCGGCCGGUg---CCAGUUcugCCG- -5'
17196 3' -58.6 NC_004333.2 + 4662 0.66 0.536736
Target:  5'- -gGGCagGCCGGCgCGCGGgucuuucuUCAGGAucgagccauCGGCg -3'
miRNA:   3'- caCUG--CGGCCG-GUGCC--------AGUUCU---------GCCG- -5'
17196 3' -58.6 NC_004333.2 + 26372 0.66 0.536736
Target:  5'- aUGACGUCGcuGCCGuCGGUCGuGAUaGCg -3'
miRNA:   3'- cACUGCGGC--CGGU-GCCAGUuCUGcCG- -5'
17196 3' -58.6 NC_004333.2 + 27889 0.66 0.526295
Target:  5'- cUGcACGCCGGCUGgcuucgUGGUCGAcuacuCGGCg -3'
miRNA:   3'- cAC-UGCGGCCGGU------GCCAGUUcu---GCCG- -5'
17196 3' -58.6 NC_004333.2 + 32164 0.66 0.520067
Target:  5'- -cGGCagGCCGGCCACGcGcuuacucgccgagguUCAGGACGacgaGCg -3'
miRNA:   3'- caCUG--CGGCCGGUGC-C---------------AGUUCUGC----CG- -5'
17196 3' -58.6 NC_004333.2 + 26067 0.66 0.515931
Target:  5'- aGUGGCGCCGcaGCgGCGG-CGcuuccggauucGGGCaGGCg -3'
miRNA:   3'- -CACUGCGGC--CGgUGCCaGU-----------UCUG-CCG- -5'
17196 3' -58.6 NC_004333.2 + 20460 0.66 0.515931
Target:  5'- --uGCGCCGGUCGugacgcagcCGGUUAGcgucccGGCGGCu -3'
miRNA:   3'- cacUGCGGCCGGU---------GCCAGUU------CUGCCG- -5'
17196 3' -58.6 NC_004333.2 + 20973 0.66 0.515931
Target:  5'- --cGCGCgCGG-CGCGGgCGAGugGGUg -3'
miRNA:   3'- cacUGCG-GCCgGUGCCaGUUCugCCG- -5'
17196 3' -58.6 NC_004333.2 + 36148 0.66 0.515931
Target:  5'- --aGCGCCGcGUCACGGgccagcucgUCGuaucGGACGGUa -3'
miRNA:   3'- cacUGCGGC-CGGUGCC---------AGU----UCUGCCG- -5'
17196 3' -58.6 NC_004333.2 + 30462 0.66 0.505651
Target:  5'- -cGGCGCCGGUCGCu-UCGAcguuCGGCa -3'
miRNA:   3'- caCUGCGGCCGGUGccAGUUcu--GCCG- -5'
17196 3' -58.6 NC_004333.2 + 30045 0.66 0.505651
Target:  5'- -cGGCGCCGGUggcagCGCGGcCGcgcuCGGCa -3'
miRNA:   3'- caCUGCGGCCG-----GUGCCaGUucu-GCCG- -5'
17196 3' -58.6 NC_004333.2 + 31097 0.66 0.505651
Target:  5'- -cGGCGCCuGGCC-CG-UCA--GCGGCg -3'
miRNA:   3'- caCUGCGG-CCGGuGCcAGUucUGCCG- -5'
17196 3' -58.6 NC_004333.2 + 5541 0.66 0.505651
Target:  5'- -cGugGCCGGCgACGG-Cu---UGGCg -3'
miRNA:   3'- caCugCGGCCGgUGCCaGuucuGCCG- -5'
17196 3' -58.6 NC_004333.2 + 20687 0.66 0.499525
Target:  5'- aUGACGCCGGauggcguguaCggaucgcagacgaauGCGGUgAuGACGGCg -3'
miRNA:   3'- cACUGCGGCCg---------G---------------UGCCAgUuCUGCCG- -5'
17196 3' -58.6 NC_004333.2 + 41833 0.66 0.495459
Target:  5'- -cGGCGcCCGGCCgcgaGCGGUCG----GGCa -3'
miRNA:   3'- caCUGC-GGCCGG----UGCCAGUucugCCG- -5'
17196 3' -58.6 NC_004333.2 + 30223 0.66 0.495459
Target:  5'- -cGGCGUacaacacgaaaGGCgGCGGcCAAGGCGcGCa -3'
miRNA:   3'- caCUGCGg----------CCGgUGCCaGUUCUGC-CG- -5'
17196 3' -58.6 NC_004333.2 + 14537 0.66 0.495459
Target:  5'- cGUGuuCGUCGGCgUAUGGggCAAGACaGCg -3'
miRNA:   3'- -CACu-GCGGCCG-GUGCCa-GUUCUGcCG- -5'
17196 3' -58.6 NC_004333.2 + 6669 0.66 0.495459
Target:  5'- -cGGCGCUgGGCgGCGcGcCGuGGCGGCg -3'
miRNA:   3'- caCUGCGG-CCGgUGC-CaGUuCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.