miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17196 5' -52.2 NC_004333.2 + 16832 0.66 0.850342
Target:  5'- cUUGCCGUGUCGGcGCagaucGUCGuUCCa -3'
miRNA:   3'- -AACGGCGCAGCU-UGaaa--CAGCuAGGc -5'
17196 5' -52.2 NC_004333.2 + 25357 0.66 0.850342
Target:  5'- -cGuuGCGUCGuACauuacGUCGGUCUGa -3'
miRNA:   3'- aaCggCGCAGCuUGaaa--CAGCUAGGC- -5'
17196 5' -52.2 NC_004333.2 + 38503 0.66 0.850342
Target:  5'- -cGCaGCGccUCGAcacguuCUUUGUCGAUCUGu -3'
miRNA:   3'- aaCGgCGC--AGCUu-----GAAACAGCUAGGC- -5'
17196 5' -52.2 NC_004333.2 + 13072 0.66 0.841434
Target:  5'- aUGCCcgGCG-CGAACgucgaUUUGUCGAUgCGc -3'
miRNA:   3'- aACGG--CGCaGCUUG-----AAACAGCUAgGC- -5'
17196 5' -52.2 NC_004333.2 + 11520 0.66 0.822923
Target:  5'- -cGCUGCGaaggcgucaugUCGAGCUUgaUGUCGAagcCCGc -3'
miRNA:   3'- aaCGGCGC-----------AGCUUGAA--ACAGCUa--GGC- -5'
17196 5' -52.2 NC_004333.2 + 25238 0.67 0.793579
Target:  5'- -cGCgGCGgcaggCGAGCg-UGUCGAUCgGa -3'
miRNA:   3'- aaCGgCGCa----GCUUGaaACAGCUAGgC- -5'
17196 5' -52.2 NC_004333.2 + 24680 0.67 0.773098
Target:  5'- -cGCUGCGcCGAucaACUgcaUGcCGAUCCGc -3'
miRNA:   3'- aaCGGCGCaGCU---UGAa--ACaGCUAGGC- -5'
17196 5' -52.2 NC_004333.2 + 15317 0.68 0.741243
Target:  5'- cUUGCCGUcgagcaggucGUCGAugaAC-UUGUCGAUCuCGg -3'
miRNA:   3'- -AACGGCG----------CAGCU---UGaAACAGCUAG-GC- -5'
17196 5' -52.2 NC_004333.2 + 15634 0.68 0.730372
Target:  5'- gUGCCGUuggCGAccucgaucacgGCUUUGUCGAagCCGa -3'
miRNA:   3'- aACGGCGca-GCU-----------UGAAACAGCUa-GGC- -5'
17196 5' -52.2 NC_004333.2 + 10771 0.69 0.685966
Target:  5'- --aUCGCGUCGAACagcGUCGAaCCGa -3'
miRNA:   3'- aacGGCGCAGCUUGaaaCAGCUaGGC- -5'
17196 5' -52.2 NC_004333.2 + 32387 0.74 0.395105
Target:  5'- -cGCCGCGUCGGGgUUcucggUGUCGGcCCGc -3'
miRNA:   3'- aaCGGCGCAGCUUgAA-----ACAGCUaGGC- -5'
17196 5' -52.2 NC_004333.2 + 35852 0.75 0.34137
Target:  5'- -cGCCGCGUUGAugUcagUG-CGAUCCa -3'
miRNA:   3'- aaCGGCGCAGCUugAa--ACaGCUAGGc -5'
17196 5' -52.2 NC_004333.2 + 13853 0.75 0.34137
Target:  5'- -cGCCGCGUCGAGCgcaUUGagCGcgCCGc -3'
miRNA:   3'- aaCGGCGCAGCUUGa--AACa-GCuaGGC- -5'
17196 5' -52.2 NC_004333.2 + 38436 1.06 0.002703
Target:  5'- cUUGCCGCGUCGAACUUUGUCGAUCCGu -3'
miRNA:   3'- -AACGGCGCAGCUUGAAACAGCUAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.