miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17197 3' -54.6 NC_004333.2 + 33480 0.66 0.725126
Target:  5'- uCGGCG-CGCAGUcGCUGcgcCGCaGGCa -3'
miRNA:   3'- -GUUGCuGUGUCGaCGACaa-GCGcCCG- -5'
17197 3' -54.6 NC_004333.2 + 31364 0.66 0.725126
Target:  5'- --uCGGCGCAGgUGCggccgGUcUCGCcGGCa -3'
miRNA:   3'- guuGCUGUGUCgACGa----CA-AGCGcCCG- -5'
17197 3' -54.6 NC_004333.2 + 33935 0.66 0.725126
Target:  5'- --cCGACuCGGCUGCaGcagCGUGGGUu -3'
miRNA:   3'- guuGCUGuGUCGACGaCaa-GCGCCCG- -5'
17197 3' -54.6 NC_004333.2 + 14861 0.66 0.725126
Target:  5'- gAAUGACGCcggagAGCUGCUGcaggCGCGucaGCa -3'
miRNA:   3'- gUUGCUGUG-----UCGACGACaa--GCGCc--CG- -5'
17197 3' -54.6 NC_004333.2 + 47018 0.66 0.714272
Target:  5'- uCGGCGcGCGCcGCcuugGCUGcgCGCGaGGCu -3'
miRNA:   3'- -GUUGC-UGUGuCGa---CGACaaGCGC-CCG- -5'
17197 3' -54.6 NC_004333.2 + 35039 0.66 0.714272
Target:  5'- uCGGCGugAC-GC-GCUGUccUGCGGGUu -3'
miRNA:   3'- -GUUGCugUGuCGaCGACAa-GCGCCCG- -5'
17197 3' -54.6 NC_004333.2 + 22586 0.66 0.713181
Target:  5'- -cACGACAuCGGCgcucgUGUUGUUCGCguccgucGGGUu -3'
miRNA:   3'- guUGCUGU-GUCG-----ACGACAAGCG-------CCCG- -5'
17197 3' -54.6 NC_004333.2 + 26816 0.66 0.713181
Target:  5'- cCGACGGCccggccuGCAGCgucguagcgagUGCUGUcgcgUCGCGcucGGCa -3'
miRNA:   3'- -GUUGCUG-------UGUCG-----------ACGACA----AGCGC---CCG- -5'
17197 3' -54.6 NC_004333.2 + 32444 0.66 0.707718
Target:  5'- --cCGACGCGGC-GCUGaacgUCGUgcugcgcacgcuaucGGGCa -3'
miRNA:   3'- guuGCUGUGUCGaCGACa---AGCG---------------CCCG- -5'
17197 3' -54.6 NC_004333.2 + 21867 0.66 0.703333
Target:  5'- gAACG-CuuuCAGCUGCcacUCGCGcGGCa -3'
miRNA:   3'- gUUGCuGu--GUCGACGacaAGCGC-CCG- -5'
17197 3' -54.6 NC_004333.2 + 19274 0.66 0.692323
Target:  5'- cCGGCGAC-CuGgUGCUGcUCGCGaGCa -3'
miRNA:   3'- -GUUGCUGuGuCgACGACaAGCGCcCG- -5'
17197 3' -54.6 NC_004333.2 + 22181 0.66 0.681253
Target:  5'- gCGGCGGC-CGGCgGCgGUUCgGCGGcuGCg -3'
miRNA:   3'- -GUUGCUGuGUCGaCGaCAAG-CGCC--CG- -5'
17197 3' -54.6 NC_004333.2 + 11364 0.66 0.681253
Target:  5'- gCGACGGCGCAGUUcaacagCGCGcGGCa -3'
miRNA:   3'- -GUUGCUGUGUCGAcgacaaGCGC-CCG- -5'
17197 3' -54.6 NC_004333.2 + 8231 0.66 0.677921
Target:  5'- gAugGACGCGGCcgacCUGUcgccacaccugucgUCGaCGGGCu -3'
miRNA:   3'- gUugCUGUGUCGac--GACA--------------AGC-GCCCG- -5'
17197 3' -54.6 NC_004333.2 + 20205 0.67 0.670133
Target:  5'- aAugGGCGCGGCUcGCgcuUUCGUGGcgGCg -3'
miRNA:   3'- gUugCUGUGUCGA-CGac-AAGCGCC--CG- -5'
17197 3' -54.6 NC_004333.2 + 6898 0.67 0.658978
Target:  5'- gCGGCGACAgCGGCgucuuuUGCgcacGUUugaggcgugCGCGGGCg -3'
miRNA:   3'- -GUUGCUGU-GUCG------ACGa---CAA---------GCGCCCG- -5'
17197 3' -54.6 NC_004333.2 + 41418 0.67 0.65786
Target:  5'- -cACGcGCACAugaucgaacaggcGCUGCUcgaCGCGGGCg -3'
miRNA:   3'- guUGC-UGUGU-------------CGACGAcaaGCGCCCG- -5'
17197 3' -54.6 NC_004333.2 + 25295 0.67 0.647796
Target:  5'- uCAACccgaACGGCaGCg--UCGCGGGCg -3'
miRNA:   3'- -GUUGcug-UGUCGaCGacaAGCGCCCG- -5'
17197 3' -54.6 NC_004333.2 + 796 0.67 0.646677
Target:  5'- gCAACGGCaaucaaccucgccACGGC-GC---UCGCGGGCg -3'
miRNA:   3'- -GUUGCUG-------------UGUCGaCGacaAGCGCCCG- -5'
17197 3' -54.6 NC_004333.2 + 33698 0.67 0.625399
Target:  5'- aUAGCGuuACGGCUGCgcaGUUUGUGaGCg -3'
miRNA:   3'- -GUUGCugUGUCGACGa--CAAGCGCcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.