miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17197 3' -54.6 NC_004333.2 + 38565 1.12 0.000565
Target:  5'- gCAACGACACAGCUGCUGUUCGCGGGCa -3'
miRNA:   3'- -GUUGCUGUGUCGACGACAAGCGCCCG- -5'
17197 3' -54.6 NC_004333.2 + 19968 0.86 0.044328
Target:  5'- gGACGGCGCggauggcccagAGCUGCUGagCGCGGGCg -3'
miRNA:   3'- gUUGCUGUG-----------UCGACGACaaGCGCCCG- -5'
17197 3' -54.6 NC_004333.2 + 31111 0.78 0.146149
Target:  5'- uCAGCGGCGCgAGUUGCUGcUCGCGcGCg -3'
miRNA:   3'- -GUUGCUGUG-UCGACGACaAGCGCcCG- -5'
17197 3' -54.6 NC_004333.2 + 15950 0.77 0.177603
Target:  5'- uGGCGGuCACGGCgGCUcGcUCGCGGGCu -3'
miRNA:   3'- gUUGCU-GUGUCGaCGA-CaAGCGCCCG- -5'
17197 3' -54.6 NC_004333.2 + 12465 0.77 0.187638
Target:  5'- gCGGCGACACuGGCgcgccggGCgGggCGCGGGCg -3'
miRNA:   3'- -GUUGCUGUG-UCGa------CGaCaaGCGCCCG- -5'
17197 3' -54.6 NC_004333.2 + 8926 0.76 0.201975
Target:  5'- -cGCGACGCGGCUucguucgcgccggcGCUGUccaucgcgugCGCGGGCu -3'
miRNA:   3'- guUGCUGUGUCGA--------------CGACAa---------GCGCCCG- -5'
17197 3' -54.6 NC_004333.2 + 14356 0.73 0.309684
Target:  5'- -cGCGACACGGCgGCaUGUUUGCGcuucaggucGGCa -3'
miRNA:   3'- guUGCUGUGUCGaCG-ACAAGCGC---------CCG- -5'
17197 3' -54.6 NC_004333.2 + 42740 0.73 0.333725
Target:  5'- aGACGAU-CGGC-GCUGUU-GCGGGCu -3'
miRNA:   3'- gUUGCUGuGUCGaCGACAAgCGCCCG- -5'
17197 3' -54.6 NC_004333.2 + 29473 0.73 0.333725
Target:  5'- gCGACGGCgaACGGCguuacgccguuUGCU--UCGCGGGCg -3'
miRNA:   3'- -GUUGCUG--UGUCG-----------ACGAcaAGCGCCCG- -5'
17197 3' -54.6 NC_004333.2 + 18598 0.71 0.385805
Target:  5'- aAACGAC-CGGCgcgGCagg-CGCGGGCg -3'
miRNA:   3'- gUUGCUGuGUCGa--CGacaaGCGCCCG- -5'
17197 3' -54.6 NC_004333.2 + 44064 0.71 0.413783
Target:  5'- uGugGuCACGGCgUGCaGUgccCGCGGGCu -3'
miRNA:   3'- gUugCuGUGUCG-ACGaCAa--GCGCCCG- -5'
17197 3' -54.6 NC_004333.2 + 13821 0.71 0.433115
Target:  5'- ---aGACGCAGCgacgGCgacgGUUCGacgaCGGGCg -3'
miRNA:   3'- guugCUGUGUCGa---CGa---CAAGC----GCCCG- -5'
17197 3' -54.6 NC_004333.2 + 5044 0.7 0.461039
Target:  5'- aGGCGGC-CGGCUGUUGgccgacgucggCGCGGcGCu -3'
miRNA:   3'- gUUGCUGuGUCGACGACaa---------GCGCC-CG- -5'
17197 3' -54.6 NC_004333.2 + 39015 0.7 0.46307
Target:  5'- ---aGGCGCuGCaGCUGUUCGcCGaGGCa -3'
miRNA:   3'- guugCUGUGuCGaCGACAAGC-GC-CCG- -5'
17197 3' -54.6 NC_004333.2 + 25118 0.69 0.494076
Target:  5'- aCGGCGAgCACGGCgGCgcgcacGUUCGCGGccuGCc -3'
miRNA:   3'- -GUUGCU-GUGUCGaCGa-----CAAGCGCC---CG- -5'
17197 3' -54.6 NC_004333.2 + 27457 0.69 0.504622
Target:  5'- uGACGGCACGGCcGUcg--CGCcGGGCa -3'
miRNA:   3'- gUUGCUGUGUCGaCGacaaGCG-CCCG- -5'
17197 3' -54.6 NC_004333.2 + 31434 0.69 0.504622
Target:  5'- aAACG-CGCGGCUGCg--UCGCucGGCa -3'
miRNA:   3'- gUUGCuGUGUCGACGacaAGCGc-CCG- -5'
17197 3' -54.6 NC_004333.2 + 3112 0.69 0.510996
Target:  5'- aCGGCGGC-CAGCUGCcguacgaucugaaGUUCGCGcGCu -3'
miRNA:   3'- -GUUGCUGuGUCGACGa------------CAAGCGCcCG- -5'
17197 3' -54.6 NC_004333.2 + 9229 0.69 0.515264
Target:  5'- aAGCG-CGCAGCUGCgGUcgaGCaGGCa -3'
miRNA:   3'- gUUGCuGUGUCGACGaCAag-CGcCCG- -5'
17197 3' -54.6 NC_004333.2 + 44956 0.69 0.515264
Target:  5'- uCAGCuGGCGCAGCgagucgggcagGUUGUcgCGCGcGGCg -3'
miRNA:   3'- -GUUG-CUGUGUCGa----------CGACAa-GCGC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.