miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17197 3' -54.6 NC_004333.2 + 38565 1.12 0.000565
Target:  5'- gCAACGACACAGCUGCUGUUCGCGGGCa -3'
miRNA:   3'- -GUUGCUGUGUCGACGACAAGCGCCCG- -5'
17197 3' -54.6 NC_004333.2 + 20205 0.67 0.670133
Target:  5'- aAugGGCGCGGCUcGCgcuUUCGUGGcgGCg -3'
miRNA:   3'- gUugCUGUGUCGA-CGac-AAGCGCC--CG- -5'
17197 3' -54.6 NC_004333.2 + 19274 0.66 0.692323
Target:  5'- cCGGCGAC-CuGgUGCUGcUCGCGaGCa -3'
miRNA:   3'- -GUUGCUGuGuCgACGACaAGCGCcCG- -5'
17197 3' -54.6 NC_004333.2 + 14861 0.66 0.725126
Target:  5'- gAAUGACGCcggagAGCUGCUGcaggCGCGucaGCa -3'
miRNA:   3'- gUUGCUGUG-----UCGACGACaa--GCGCc--CG- -5'
17197 3' -54.6 NC_004333.2 + 18598 0.71 0.385805
Target:  5'- aAACGAC-CGGCgcgGCagg-CGCGGGCg -3'
miRNA:   3'- gUUGCUGuGUCGa--CGacaaGCGCCCG- -5'
17197 3' -54.6 NC_004333.2 + 13821 0.71 0.433115
Target:  5'- ---aGACGCAGCgacgGCgacgGUUCGacgaCGGGCg -3'
miRNA:   3'- guugCUGUGUCGa---CGa---CAAGC----GCCCG- -5'
17197 3' -54.6 NC_004333.2 + 39015 0.7 0.46307
Target:  5'- ---aGGCGCuGCaGCUGUUCGcCGaGGCa -3'
miRNA:   3'- guugCUGUGuCGaCGACAAGC-GC-CCG- -5'
17197 3' -54.6 NC_004333.2 + 25118 0.69 0.494076
Target:  5'- aCGGCGAgCACGGCgGCgcgcacGUUCGCGGccuGCc -3'
miRNA:   3'- -GUUGCU-GUGUCGaCGa-----CAAGCGCC---CG- -5'
17197 3' -54.6 NC_004333.2 + 41715 0.69 0.547702
Target:  5'- gGGCGGCACGGC-GCgaucaacgagGagaucggCGCGGGCg -3'
miRNA:   3'- gUUGCUGUGUCGaCGa---------Caa-----GCGCCCG- -5'
17197 3' -54.6 NC_004333.2 + 6898 0.67 0.658978
Target:  5'- gCGGCGACAgCGGCgucuuuUGCgcacGUUugaggcgugCGCGGGCg -3'
miRNA:   3'- -GUUGCUGU-GUCG------ACGa---CAA---------GCGCCCG- -5'
17197 3' -54.6 NC_004333.2 + 9162 0.68 0.556464
Target:  5'- --uCGAcCGCAGCUGCgcgcuugcguucGUUCGCGacGGCa -3'
miRNA:   3'- guuGCU-GUGUCGACGa-----------CAAGCGC--CCG- -5'
17197 3' -54.6 NC_004333.2 + 30975 0.69 0.525996
Target:  5'- -cGCGACuccauaaAGCccUGCUGUU-GCGGGCu -3'
miRNA:   3'- guUGCUGug-----UCG--ACGACAAgCGCCCG- -5'
17197 3' -54.6 NC_004333.2 + 31111 0.78 0.146149
Target:  5'- uCAGCGGCGCgAGUUGCUGcUCGCGcGCg -3'
miRNA:   3'- -GUUGCUGUG-UCGACGACaAGCGCcCG- -5'
17197 3' -54.6 NC_004333.2 + 37916 0.68 0.558661
Target:  5'- uCGGCGACGCAaaCUGcCUGcgUCGUGGGa -3'
miRNA:   3'- -GUUGCUGUGUc-GAC-GACa-AGCGCCCg -5'
17197 3' -54.6 NC_004333.2 + 8926 0.76 0.201975
Target:  5'- -cGCGACGCGGCUucguucgcgccggcGCUGUccaucgcgugCGCGGGCu -3'
miRNA:   3'- guUGCUGUGUCGA--------------CGACAa---------GCGCCCG- -5'
17197 3' -54.6 NC_004333.2 + 9637 0.69 0.525996
Target:  5'- cCGGCGGCGCGccuGCgcccgGCUGUUCGUuuucGGGa -3'
miRNA:   3'- -GUUGCUGUGU---CGa----CGACAAGCG----CCCg -5'
17197 3' -54.6 NC_004333.2 + 41418 0.67 0.65786
Target:  5'- -cACGcGCACAugaucgaacaggcGCUGCUcgaCGCGGGCg -3'
miRNA:   3'- guUGC-UGUGU-------------CGACGAcaaGCGCCCG- -5'
17197 3' -54.6 NC_004333.2 + 22181 0.66 0.681253
Target:  5'- gCGGCGGC-CGGCgGCgGUUCgGCGGcuGCg -3'
miRNA:   3'- -GUUGCUGuGUCGaCGaCAAG-CGCC--CG- -5'
17197 3' -54.6 NC_004333.2 + 14356 0.73 0.309684
Target:  5'- -cGCGACACGGCgGCaUGUUUGCGcuucaggucGGCa -3'
miRNA:   3'- guUGCUGUGUCGaCG-ACAAGCGC---------CCG- -5'
17197 3' -54.6 NC_004333.2 + 5044 0.7 0.461039
Target:  5'- aGGCGGC-CGGCUGUUGgccgacgucggCGCGGcGCu -3'
miRNA:   3'- gUUGCUGuGUCGACGACaa---------GCGCC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.