miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17197 5' -63.3 NC_004333.2 + 3290 0.66 0.315239
Target:  5'- gGCGUCAuCgggGCGGgC-GGCGCGCCGg -3'
miRNA:   3'- -CGCGGUcGa--UGUCgGcCCGCGCGGCg -5'
17197 5' -63.3 NC_004333.2 + 11908 0.66 0.315239
Target:  5'- cGCGgcCCGGCaugcGCAGC--GGCGCGCgCGCc -3'
miRNA:   3'- -CGC--GGUCGa---UGUCGgcCCGCGCG-GCG- -5'
17197 5' -63.3 NC_004333.2 + 20372 0.66 0.315239
Target:  5'- aCGCCgucgaaaaugaAGUUAaGGCCGuGGCcgcaguggccGCGCCGCu -3'
miRNA:   3'- cGCGG-----------UCGAUgUCGGC-CCG----------CGCGGCG- -5'
17197 5' -63.3 NC_004333.2 + 20503 0.66 0.315239
Target:  5'- nCGCaaccGCUGCcGGCCGccgcCGCGCCGCu -3'
miRNA:   3'- cGCGgu--CGAUG-UCGGCcc--GCGCGGCG- -5'
17197 5' -63.3 NC_004333.2 + 18893 0.66 0.315239
Target:  5'- cGCGCgGGCUucgauaGCAGCac-GCGCccugcgGCCGCg -3'
miRNA:   3'- -CGCGgUCGA------UGUCGgccCGCG------CGGCG- -5'
17197 5' -63.3 NC_004333.2 + 39706 0.66 0.315239
Target:  5'- cGCGuCCGGCaGCAGUCGGcCGCuaggauguucauGCaCGCg -3'
miRNA:   3'- -CGC-GGUCGaUGUCGGCCcGCG------------CG-GCG- -5'
17197 5' -63.3 NC_004333.2 + 30777 0.66 0.313012
Target:  5'- uUGCCAGCUuccaggacgaaguuGCcGCCGccGGCGgCGgCGCg -3'
miRNA:   3'- cGCGGUCGA--------------UGuCGGC--CCGC-GCgGCG- -5'
17197 5' -63.3 NC_004333.2 + 13548 0.66 0.307864
Target:  5'- cCGCCGGCggccaGGCCGGaUGUGUCGg -3'
miRNA:   3'- cGCGGUCGaug--UCGGCCcGCGCGGCg -5'
17197 5' -63.3 NC_004333.2 + 2455 0.66 0.307864
Target:  5'- cCGCCGGC-GCcGUCauGGGCuaCGCCGCg -3'
miRNA:   3'- cGCGGUCGaUGuCGG--CCCGc-GCGGCG- -5'
17197 5' -63.3 NC_004333.2 + 40039 0.66 0.307864
Target:  5'- aCGCCAGCaccucauUAGUCGGGCacucuucgaGCGCUuGCu -3'
miRNA:   3'- cGCGGUCGau-----GUCGGCCCG---------CGCGG-CG- -5'
17197 5' -63.3 NC_004333.2 + 15541 0.66 0.307864
Target:  5'- uGCGCuCGGC-AC-GCCaaGCGCGCCGa -3'
miRNA:   3'- -CGCG-GUCGaUGuCGGccCGCGCGGCg -5'
17197 5' -63.3 NC_004333.2 + 26137 0.66 0.307133
Target:  5'- aGCGCCGccGCUGCGGCgccacuggcaaauCcGGCGCaCCGUc -3'
miRNA:   3'- -CGCGGU--CGAUGUCG-------------GcCCGCGcGGCG- -5'
17197 5' -63.3 NC_004333.2 + 44395 0.66 0.307133
Target:  5'- gGCGCguGCgcggUACAacggccuGCCGGGCuCGCUGg -3'
miRNA:   3'- -CGCGguCG----AUGU-------CGGCCCGcGCGGCg -5'
17197 5' -63.3 NC_004333.2 + 45495 0.66 0.303502
Target:  5'- -gGUCAGCgagAUcgucuacaacuggcgGGCgGGGCGCcCCGCa -3'
miRNA:   3'- cgCGGUCGa--UG---------------UCGgCCCGCGcGGCG- -5'
17197 5' -63.3 NC_004333.2 + 20996 0.66 0.300621
Target:  5'- uGCGUUucgAGCgcgugGCAGCCgucacGGGCGacgaagugGCCGCg -3'
miRNA:   3'- -CGCGG---UCGa----UGUCGG-----CCCGCg-------CGGCG- -5'
17197 5' -63.3 NC_004333.2 + 38403 0.66 0.300621
Target:  5'- aCGCCGGCcACGGUCaagacGGCGaucgagacgcuUGCCGCg -3'
miRNA:   3'- cGCGGUCGaUGUCGGc----CCGC-----------GCGGCG- -5'
17197 5' -63.3 NC_004333.2 + 26743 0.66 0.300621
Target:  5'- gGCGaCCugacGCUaucgGCAGCC-GGCGCGaucaCGCu -3'
miRNA:   3'- -CGC-GGu---CGA----UGUCGGcCCGCGCg---GCG- -5'
17197 5' -63.3 NC_004333.2 + 29991 0.66 0.300621
Target:  5'- aGCGCaUGGCaaaGCGGCCGaGGa-UGCCGCg -3'
miRNA:   3'- -CGCG-GUCGa--UGUCGGC-CCgcGCGGCG- -5'
17197 5' -63.3 NC_004333.2 + 27501 0.66 0.300621
Target:  5'- gGCGCCuGGUcgACAGCCGu---CGCCGCg -3'
miRNA:   3'- -CGCGG-UCGa-UGUCGGCccgcGCGGCG- -5'
17197 5' -63.3 NC_004333.2 + 8617 0.66 0.300621
Target:  5'- aCGauCCAGCcggGCAuGCCGGuCGCGCUGUu -3'
miRNA:   3'- cGC--GGUCGa--UGU-CGGCCcGCGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.