miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17198 3' -50.3 NC_004333.2 + 26566 0.66 0.938388
Target:  5'- aUCGACGgaaauggcgugcGGCACGcGACGcacauUCACGACg -3'
miRNA:   3'- -GGUUGU------------UCGUGCuCUGCuu---GGUGCUG- -5'
17198 3' -50.3 NC_004333.2 + 21524 0.66 0.938388
Target:  5'- gUCGACGGGCGCGucGAacgcguaucgucCGAAUCGcCGACu -3'
miRNA:   3'- -GGUUGUUCGUGCu-CU------------GCUUGGU-GCUG- -5'
17198 3' -50.3 NC_004333.2 + 38739 0.66 0.938388
Target:  5'- aCAAUccGCAUGAcGAUGGaagcgGCCACGAg -3'
miRNA:   3'- gGUUGuuCGUGCU-CUGCU-----UGGUGCUg -5'
17198 3' -50.3 NC_004333.2 + 20664 0.66 0.938388
Target:  5'- gCCAgugGCAGgaggcGCACGGGAUGAcGCCggAUGGCg -3'
miRNA:   3'- -GGU---UGUU-----CGUGCUCUGCU-UGG--UGCUG- -5'
17198 3' -50.3 NC_004333.2 + 11266 0.66 0.938388
Target:  5'- cCCAauGCAGGC-CGAGuucGCGuuGCCGCGcGCu -3'
miRNA:   3'- -GGU--UGUUCGuGCUC---UGCu-UGGUGC-UG- -5'
17198 3' -50.3 NC_004333.2 + 2613 0.66 0.938388
Target:  5'- cCCAAUu-GCGCGAcaGACcGACCGCG-Cg -3'
miRNA:   3'- -GGUUGuuCGUGCU--CUGcUUGGUGCuG- -5'
17198 3' -50.3 NC_004333.2 + 42535 0.66 0.938388
Target:  5'- gCAACuGGUACGAGuucgccgucaACGGGCauCACGGCc -3'
miRNA:   3'- gGUUGuUCGUGCUC----------UGCUUG--GUGCUG- -5'
17198 3' -50.3 NC_004333.2 + 1939 0.66 0.938388
Target:  5'- uCCGGgcCAGGCGCGuca-GAACCgcACGACa -3'
miRNA:   3'- -GGUU--GUUCGUGCucugCUUGG--UGCUG- -5'
17198 3' -50.3 NC_004333.2 + 41294 0.66 0.938388
Target:  5'- aCGGCGA-CACGAccGGCGAcagguagcccucGCCACGAg -3'
miRNA:   3'- gGUUGUUcGUGCU--CUGCU------------UGGUGCUg -5'
17198 3' -50.3 NC_004333.2 + 413 0.66 0.938388
Target:  5'- gCCGACGGGCAUuucGGGCGG--UACGGCc -3'
miRNA:   3'- -GGUUGUUCGUGc--UCUGCUugGUGCUG- -5'
17198 3' -50.3 NC_004333.2 + 8133 0.66 0.932916
Target:  5'- cCCGACGAGCcCGucGACGAcaggugUgGCGACa -3'
miRNA:   3'- -GGUUGUUCGuGCu-CUGCUu-----GgUGCUG- -5'
17198 3' -50.3 NC_004333.2 + 43030 0.66 0.932916
Target:  5'- uCCGGCAGGCcCGcauGuCGAGuuCUACGACa -3'
miRNA:   3'- -GGUUGUUCGuGCu--CuGCUU--GGUGCUG- -5'
17198 3' -50.3 NC_004333.2 + 29782 0.66 0.932916
Target:  5'- -gAGCuGGCGCGGGuCGuucGCgACGACg -3'
miRNA:   3'- ggUUGuUCGUGCUCuGCu--UGgUGCUG- -5'
17198 3' -50.3 NC_004333.2 + 37460 0.66 0.932916
Target:  5'- gCCGACGuAGgACGAugagGACGGcCgCGCGACg -3'
miRNA:   3'- -GGUUGU-UCgUGCU----CUGCUuG-GUGCUG- -5'
17198 3' -50.3 NC_004333.2 + 2825 0.66 0.932916
Target:  5'- gCGACcGGCACG--GCG-GCCGCGAUc -3'
miRNA:   3'- gGUUGuUCGUGCucUGCuUGGUGCUG- -5'
17198 3' -50.3 NC_004333.2 + 29482 0.66 0.932916
Target:  5'- gCCAGCGc-CGCGAcGGCGAACgGCGuuACg -3'
miRNA:   3'- -GGUUGUucGUGCU-CUGCUUGgUGC--UG- -5'
17198 3' -50.3 NC_004333.2 + 30811 0.66 0.932916
Target:  5'- uUCggUGAGUACcucGGCGAcGCCACGGCc -3'
miRNA:   3'- -GGuuGUUCGUGcu-CUGCU-UGGUGCUG- -5'
17198 3' -50.3 NC_004333.2 + 2794 0.66 0.927148
Target:  5'- -uGACGGGCACGAacaacuucgccGACGAgaucgGCCuguCGGCc -3'
miRNA:   3'- ggUUGUUCGUGCU-----------CUGCU-----UGGu--GCUG- -5'
17198 3' -50.3 NC_004333.2 + 47806 0.66 0.927148
Target:  5'- gCCGGgGuGUACGAGGCcacGGCgCGCGACg -3'
miRNA:   3'- -GGUUgUuCGUGCUCUGc--UUG-GUGCUG- -5'
17198 3' -50.3 NC_004333.2 + 27564 0.66 0.927148
Target:  5'- aUCAACc-GCACGcaAUGGAUCGCGGCg -3'
miRNA:   3'- -GGUUGuuCGUGCucUGCUUGGUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.