miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17198 3' -50.3 NC_004333.2 + 307 0.68 0.853548
Target:  5'- aCGGCAcGGCGUGGGGCGA-CC-CGACg -3'
miRNA:   3'- gGUUGU-UCGUGCUCUGCUuGGuGCUG- -5'
17198 3' -50.3 NC_004333.2 + 413 0.66 0.938388
Target:  5'- gCCGACGGGCAUuucGGGCGG--UACGGCc -3'
miRNA:   3'- -GGUUGUUCGUGc--UCUGCUugGUGCUG- -5'
17198 3' -50.3 NC_004333.2 + 862 0.69 0.807024
Target:  5'- gCC-AUAGGCAcCGAGACGAcGCCguugGCGAUc -3'
miRNA:   3'- -GGuUGUUCGU-GCUCUGCU-UGG----UGCUG- -5'
17198 3' -50.3 NC_004333.2 + 1939 0.66 0.938388
Target:  5'- uCCGGgcCAGGCGCGuca-GAACCgcACGACa -3'
miRNA:   3'- -GGUU--GUUCGUGCucugCUUGG--UGCUG- -5'
17198 3' -50.3 NC_004333.2 + 2553 0.67 0.89388
Target:  5'- uCCAcgacGCGAaUGCGAGACGAucggcaAUCACGGCc -3'
miRNA:   3'- -GGU----UGUUcGUGCUCUGCU------UGGUGCUG- -5'
17198 3' -50.3 NC_004333.2 + 2613 0.66 0.938388
Target:  5'- cCCAAUu-GCGCGAcaGACcGACCGCG-Cg -3'
miRNA:   3'- -GGUUGuuCGUGCU--CUGcUUGGUGCuG- -5'
17198 3' -50.3 NC_004333.2 + 2706 0.79 0.279725
Target:  5'- gCCGGCAAGCGCGA--UGAACCGCG-Cg -3'
miRNA:   3'- -GGUUGUUCGUGCUcuGCUUGGUGCuG- -5'
17198 3' -50.3 NC_004333.2 + 2794 0.66 0.927148
Target:  5'- -uGACGGGCACGAacaacuucgccGACGAgaucgGCCuguCGGCc -3'
miRNA:   3'- ggUUGUUCGUGCU-----------CUGCU-----UGGu--GCUG- -5'
17198 3' -50.3 NC_004333.2 + 2825 0.66 0.932916
Target:  5'- gCGACcGGCACG--GCG-GCCGCGAUc -3'
miRNA:   3'- gGUUGuUCGUGCucUGCuUGGUGCUG- -5'
17198 3' -50.3 NC_004333.2 + 3184 0.7 0.73399
Target:  5'- uCCuGCGugAGCACGAGGCcgguGAGCCGgccCGGCg -3'
miRNA:   3'- -GGuUGU--UCGUGCUCUG----CUUGGU---GCUG- -5'
17198 3' -50.3 NC_004333.2 + 3681 0.7 0.755596
Target:  5'- gCCcGCAGGCGCccgacuGGGCGAauacgaucGCCGCGAUg -3'
miRNA:   3'- -GGuUGUUCGUGc-----UCUGCU--------UGGUGCUG- -5'
17198 3' -50.3 NC_004333.2 + 3791 0.69 0.776661
Target:  5'- cCCGGgGGuGCGCGAGGCGcucAACCA-GACg -3'
miRNA:   3'- -GGUUgUU-CGUGCUCUGC---UUGGUgCUG- -5'
17198 3' -50.3 NC_004333.2 + 4668 0.66 0.910764
Target:  5'- gCCGGC--GCGCGGGucuuucuucaggauCGAGCCAuCGGCg -3'
miRNA:   3'- -GGUUGuuCGUGCUCu-------------GCUUGGU-GCUG- -5'
17198 3' -50.3 NC_004333.2 + 4984 0.69 0.807024
Target:  5'- gCGGCAGGCAUauu-CGAACgACGACg -3'
miRNA:   3'- gGUUGUUCGUGcucuGCUUGgUGCUG- -5'
17198 3' -50.3 NC_004333.2 + 5975 0.69 0.776661
Target:  5'- aCCAGCGAagGCGAcACGGugCugGACa -3'
miRNA:   3'- -GGUUGUUcgUGCUcUGCUugGugCUG- -5'
17198 3' -50.3 NC_004333.2 + 6580 0.69 0.816767
Target:  5'- aUCGACAAGCACGucaacuAUGAGCUguauugggGCGACu -3'
miRNA:   3'- -GGUUGUUCGUGCuc----UGCUUGG--------UGCUG- -5'
17198 3' -50.3 NC_004333.2 + 7147 0.68 0.862145
Target:  5'- gCAACu-GCGCGAGACGucaacaucAUCAuCGACg -3'
miRNA:   3'- gGUUGuuCGUGCUCUGCu-------UGGU-GCUG- -5'
17198 3' -50.3 NC_004333.2 + 7203 0.67 0.886358
Target:  5'- aCUAuguCAAGCACGuAGACGAaaagaaACCGCccgaaGGCg -3'
miRNA:   3'- -GGUu--GUUCGUGC-UCUGCU------UGGUG-----CUG- -5'
17198 3' -50.3 NC_004333.2 + 7275 0.69 0.816767
Target:  5'- gCCGAuCAucuGCGCGAcGGCGAACgggcggaagauCACGGCa -3'
miRNA:   3'- -GGUU-GUu--CGUGCU-CUGCUUG-----------GUGCUG- -5'
17198 3' -50.3 NC_004333.2 + 7382 0.68 0.862145
Target:  5'- gUCGGCAGGCACGuGGgGuGCCGUGAUc -3'
miRNA:   3'- -GGUUGUUCGUGCuCUgCuUGGUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.