miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17198 5' -52.8 NC_004333.2 + 45150 0.66 0.790603
Target:  5'- gCAGUcCGCCGUUUUcuUGCCCGggcgcggccgcgcggUGUUCa -3'
miRNA:   3'- -GUUA-GCGGCGAAGu-ACGGGC---------------ACAAGc -5'
17198 5' -52.8 NC_004333.2 + 38616 0.66 0.786565
Target:  5'- gGcgCGCCGCUgcccgUgGUGCCCGUucuGaUCGg -3'
miRNA:   3'- gUuaGCGGCGA-----AgUACGGGCA---CaAGC- -5'
17198 5' -52.8 NC_004333.2 + 2754 0.67 0.776351
Target:  5'- aGAUCGCgGCcgcCGUGCCgGUcgcGUUCGu -3'
miRNA:   3'- gUUAGCGgCGaa-GUACGGgCA---CAAGC- -5'
17198 5' -52.8 NC_004333.2 + 27856 0.67 0.765979
Target:  5'- -cGUCGCUgaGCUUCAccgGCCCuGcGUUCGa -3'
miRNA:   3'- guUAGCGG--CGAAGUa--CGGG-CaCAAGC- -5'
17198 5' -52.8 NC_004333.2 + 14111 0.67 0.765979
Target:  5'- -cGUCGaCGCUaucgUCGUgGCCCGUGaUCGu -3'
miRNA:   3'- guUAGCgGCGA----AGUA-CGGGCACaAGC- -5'
17198 5' -52.8 NC_004333.2 + 46887 0.67 0.755463
Target:  5'- cCGAgUGCCGCgagc-GCCUGUGUUCa -3'
miRNA:   3'- -GUUaGCGGCGaaguaCGGGCACAAGc -5'
17198 5' -52.8 NC_004333.2 + 11983 0.67 0.734043
Target:  5'- gCGcgCGCCGCUgcgCAUGCCgGgccgCGa -3'
miRNA:   3'- -GUuaGCGGCGAa--GUACGGgCacaaGC- -5'
17198 5' -52.8 NC_004333.2 + 25373 0.67 0.723165
Target:  5'- gCAGUCGCCgGCgUCG-GCCCG-GUUgCGa -3'
miRNA:   3'- -GUUAGCGG-CGaAGUaCGGGCaCAA-GC- -5'
17198 5' -52.8 NC_004333.2 + 18384 0.68 0.701135
Target:  5'- --cUCGCCgGCaUCAUGCUCGUGccgUCc -3'
miRNA:   3'- guuAGCGG-CGaAGUACGGGCACa--AGc -5'
17198 5' -52.8 NC_004333.2 + 1399 0.68 0.690008
Target:  5'- ----gGCCGUgaUCGUGUUCGUGUUCa -3'
miRNA:   3'- guuagCGGCGa-AGUACGGGCACAAGc -5'
17198 5' -52.8 NC_004333.2 + 34568 0.7 0.577388
Target:  5'- aCAAUCGCCGCgcaUCcUGCC-GUGUUg- -3'
miRNA:   3'- -GUUAGCGGCGa--AGuACGGgCACAAgc -5'
17198 5' -52.8 NC_004333.2 + 38955 1.08 0.001679
Target:  5'- gCAAUCGCCGCUUCAUGCCCGUGUUCGu -3'
miRNA:   3'- -GUUAGCGGCGAAGUACGGGCACAAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.