miRNA display CGI


Results 21 - 40 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17199 3' -62.9 NC_004333.2 + 12065 0.66 0.310865
Target:  5'- cCGCaucCGUUGCACC-GCGaUACGGCCg -3'
miRNA:   3'- cGCGc--GCGACGUGGcCGUcGUGCCGG- -5'
17199 3' -62.9 NC_004333.2 + 5233 0.66 0.310128
Target:  5'- gGCGCaaGCUGCGCUgcucgacaacacgGGCGGCuCGcCCg -3'
miRNA:   3'- -CGCGcgCGACGUGG-------------CCGUCGuGCcGG- -5'
17199 3' -62.9 NC_004333.2 + 23396 0.66 0.303553
Target:  5'- aGgGCGgucaCGCcGUACUGGUAGCcCGGCa -3'
miRNA:   3'- -CgCGC----GCGaCGUGGCCGUCGuGCCGg -5'
17199 3' -62.9 NC_004333.2 + 24462 0.66 0.303553
Target:  5'- cCGgGCuguuGCUGUACUgcuucuGGaCAGUGCGGCCg -3'
miRNA:   3'- cGCgCG----CGACGUGG------CC-GUCGUGCCGG- -5'
17199 3' -62.9 NC_004333.2 + 197 0.66 0.303553
Target:  5'- cCGUGCGCc-CGCCGGCuuGGCuuGcGCCa -3'
miRNA:   3'- cGCGCGCGacGUGGCCG--UCGugC-CGG- -5'
17199 3' -62.9 NC_004333.2 + 22430 0.66 0.303553
Target:  5'- gGCGCGUGCgGCGCaGGUuuCGuCGGCUu -3'
miRNA:   3'- -CGCGCGCGaCGUGgCCGucGU-GCCGG- -5'
17199 3' -62.9 NC_004333.2 + 47588 0.66 0.303553
Target:  5'- gGCGaGUGCauucaaUGUACUGGUcGCGcCGGCCg -3'
miRNA:   3'- -CGCgCGCG------ACGUGGCCGuCGU-GCCGG- -5'
17199 3' -62.9 NC_004333.2 + 6853 0.66 0.303553
Target:  5'- -gGCGCGCUGUcguaugcgAUCGGCuaccucgaGGCGCGcGaCCg -3'
miRNA:   3'- cgCGCGCGACG--------UGGCCG--------UCGUGC-C-GG- -5'
17199 3' -62.9 NC_004333.2 + 30251 0.66 0.302107
Target:  5'- gGCGUGCGCgaguccgacuuggUGCcCuCGGCguacaacacgaaaGGCGgCGGCCa -3'
miRNA:   3'- -CGCGCGCG-------------ACGuG-GCCG-------------UCGU-GCCGG- -5'
17199 3' -62.9 NC_004333.2 + 44604 0.66 0.296374
Target:  5'- cGUGCGCGCgaaGUGCuCGG-GGUgauCGGCCg -3'
miRNA:   3'- -CGCGCGCGa--CGUG-GCCgUCGu--GCCGG- -5'
17199 3' -62.9 NC_004333.2 + 17751 0.66 0.296374
Target:  5'- -gGUGCGCaaGCauucaGCCGGCGccGCGCGGUa -3'
miRNA:   3'- cgCGCGCGa-CG-----UGGCCGU--CGUGCCGg -5'
17199 3' -62.9 NC_004333.2 + 40877 0.66 0.296374
Target:  5'- nCGCGCGacucgguaucuaCUGCGCCGGCuugcGCAUGaaaGUCg -3'
miRNA:   3'- cGCGCGC------------GACGUGGCCGu---CGUGC---CGG- -5'
17199 3' -62.9 NC_004333.2 + 45977 0.66 0.296374
Target:  5'- gGCGUGgugucccggccUGCcacucgGCGCCgagGGCuGGCACGGCCu -3'
miRNA:   3'- -CGCGC-----------GCGa-----CGUGG---CCG-UCGUGCCGG- -5'
17199 3' -62.9 NC_004333.2 + 31301 0.66 0.289328
Target:  5'- gGC-CGCacCUGCGCCGacGCcgAGCACGGCg -3'
miRNA:   3'- -CGcGCGc-GACGUGGC--CG--UCGUGCCGg -5'
17199 3' -62.9 NC_004333.2 + 44464 0.66 0.289328
Target:  5'- -gGC-CGUUGUACCGcGCAcGCGCcGCCg -3'
miRNA:   3'- cgCGcGCGACGUGGC-CGU-CGUGcCGG- -5'
17199 3' -62.9 NC_004333.2 + 32803 0.66 0.289328
Target:  5'- uGCGCGUGacguuCUGCucGCCGGCuauCGCuGCCg -3'
miRNA:   3'- -CGCGCGC-----GACG--UGGCCGuc-GUGcCGG- -5'
17199 3' -62.9 NC_004333.2 + 32834 0.66 0.289328
Target:  5'- gGUGcCGCGCUuaugGCCGGCGGCAgCGaCCu -3'
miRNA:   3'- -CGC-GCGCGAcg--UGGCCGUCGU-GCcGG- -5'
17199 3' -62.9 NC_004333.2 + 6653 0.66 0.289328
Target:  5'- gGCaGCGCGCUcggcGCGCuCGaGCAgGCGCGcauccGCCg -3'
miRNA:   3'- -CG-CGCGCGA----CGUG-GC-CGU-CGUGC-----CGG- -5'
17199 3' -62.9 NC_004333.2 + 4697 0.66 0.28724
Target:  5'- cGCGaugGCGCU-CAauuaCGGUaccucgaaacugccGGCGCGGCCg -3'
miRNA:   3'- -CGCg--CGCGAcGUg---GCCG--------------UCGUGCCGG- -5'
17199 3' -62.9 NC_004333.2 + 10745 0.67 0.282414
Target:  5'- gGCG-GCGUaucGUACCGcGCGGCcCGGCg -3'
miRNA:   3'- -CGCgCGCGa--CGUGGC-CGUCGuGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.