miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
172 5' -57 AC_000007.1 + 5335 0.66 0.484904
Target:  5'- gUGCgcuccgGGCUGCGCGCuGGCCa- -3'
miRNA:   3'- -ACGaacuaaCCGGCGUGCGcCUGGag -5'
172 5' -57 AC_000007.1 + 10000 0.66 0.443686
Target:  5'- gGCggcgGAguUUGGCCGUAgGUGGcgcCCUCu -3'
miRNA:   3'- aCGaa--CU--AACCGGCGUgCGCCu--GGAG- -5'
172 5' -57 AC_000007.1 + 10792 0.67 0.423829
Target:  5'- aGCUuuuuUGGccacUGGCCGCGCGCGG-CgUa -3'
miRNA:   3'- aCGA----ACUa---ACCGGCGUGCGCCuGgAg -5'
172 5' -57 AC_000007.1 + 25074 0.67 0.404513
Target:  5'- aGCUaaUGA-UGGCCGCAgugcuuguuacCGUGGAgCUUg -3'
miRNA:   3'- aCGA--ACUaACCGGCGU-----------GCGCCUgGAG- -5'
172 5' -57 AC_000007.1 + 25475 0.67 0.395066
Target:  5'- cGCUccg-UGGCCGCGCaccugGCGGACauuaUCu -3'
miRNA:   3'- aCGAacuaACCGGCGUG-----CGCCUGg---AG- -5'
172 5' -57 AC_000007.1 + 8350 0.69 0.316705
Target:  5'- aGCUccGAcc-GCCGCGCGCGGACaUCu -3'
miRNA:   3'- aCGAa-CUaacCGGCGUGCGCCUGgAG- -5'
172 5' -57 AC_000007.1 + 18692 0.7 0.285833
Target:  5'- gGCUacg--GGCCGCAucgauCGCGGACCg- -3'
miRNA:   3'- aCGAacuaaCCGGCGU-----GCGCCUGGag -5'
172 5' -57 AC_000007.1 + 17177 1.1 0.00028
Target:  5'- cUGCUUGAUUGGCCGCACGCGGACCUCg -3'
miRNA:   3'- -ACGAACUAACCGGCGUGCGCCUGGAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.