miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1720 3' -65 NC_001347.2 + 1035 0.68 0.489933
Target:  5'- -aCGCCgggccacggcguccaCCGGGUaGAaccccGCGGGCCGCCg -3'
miRNA:   3'- uaGCGGag-------------GGCUCG-CU-----CGCCCGGCGG- -5'
1720 3' -65 NC_001347.2 + 196146 0.68 0.519281
Target:  5'- -cUGCCUgCCG-GCGGcccugugccGCGGGuuGCCc -3'
miRNA:   3'- uaGCGGAgGGCuCGCU---------CGCCCggCGG- -5'
1720 3' -65 NC_001347.2 + 195658 0.68 0.49257
Target:  5'- uGUCGCacgCCCGAGgaucuGGC-GGCCGCCg -3'
miRNA:   3'- -UAGCGga-GGGCUCgc---UCGcCCGGCGG- -5'
1720 3' -65 NC_001347.2 + 126441 0.69 0.461382
Target:  5'- -aCGCCUCCaUGGGCGAGuUcgcgcgucugcuacuGGGCuCGCCc -3'
miRNA:   3'- uaGCGGAGG-GCUCGCUC-G---------------CCCG-GCGG- -5'
1720 3' -65 NC_001347.2 + 185337 0.69 0.457981
Target:  5'- --aGUauaggUCCGuGCGAGCaGGCCGCCg -3'
miRNA:   3'- uagCGga---GGGCuCGCUCGcCCGGCGG- -5'
1720 3' -65 NC_001347.2 + 190122 0.69 0.416649
Target:  5'- cGUCGCC-CCagaaGAGCG-GUacgGGGCCGCa -3'
miRNA:   3'- -UAGCGGaGGg---CUCGCuCG---CCCGGCGg -5'
1720 3' -65 NC_001347.2 + 128829 0.69 0.432912
Target:  5'- cGUCGUuaucUUCCCuGAGCGAGCGcgaacGCCGCg -3'
miRNA:   3'- -UAGCG----GAGGG-CUCGCUCGCc----CGGCGg -5'
1720 3' -65 NC_001347.2 + 39803 0.7 0.377677
Target:  5'- -cCGCCUCCCGGGCGcgcacccaucuaGGUGGa-CGCCc -3'
miRNA:   3'- uaGCGGAGGGCUCGC------------UCGCCcgGCGG- -5'
1720 3' -65 NC_001347.2 + 13508 0.7 0.396076
Target:  5'- -aCGCCgggugcucacccgCCGGGCGGccCGGGCCGCCg -3'
miRNA:   3'- uaGCGGag-----------GGCUCGCUc-GCCCGGCGG- -5'
1720 3' -65 NC_001347.2 + 1989 0.7 0.384509
Target:  5'- -aCGaCgUCCCGccagcGGCGAGCGgcacggagacggaGGCCGCCg -3'
miRNA:   3'- uaGC-GgAGGGC-----UCGCUCGC-------------CCGGCGG- -5'
1720 3' -65 NC_001347.2 + 153811 0.7 0.377677
Target:  5'- aGUCGCCU-CCGGGCGAgGUGGG-UGCUu -3'
miRNA:   3'- -UAGCGGAgGGCUCGCU-CGCCCgGCGG- -5'
1720 3' -65 NC_001347.2 + 184507 0.71 0.327384
Target:  5'- -cCGCCgCgCCGuGUGAGaguuccaGGGCCGCCg -3'
miRNA:   3'- uaGCGGaG-GGCuCGCUCg------CCCGGCGG- -5'
1720 3' -65 NC_001347.2 + 215343 0.72 0.313956
Target:  5'- -aCGCC-CCgGGGCGuGCGGGCaaaaGCUa -3'
miRNA:   3'- uaGCGGaGGgCUCGCuCGCCCGg---CGG- -5'
1720 3' -65 NC_001347.2 + 189878 0.75 0.202269
Target:  5'- gGUCGCCUgUCCGgcAGC-AGcCGGGCCGCCu -3'
miRNA:   3'- -UAGCGGA-GGGC--UCGcUC-GCCCGGCGG- -5'
1720 3' -65 NC_001347.2 + 82894 1.09 0.000755
Target:  5'- cAUCGCCUCCCGAGCGAGCGGGCCGCCg -3'
miRNA:   3'- -UAGCGGAGGGCUCGCUCGCCCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.