miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1720 3' -65 NC_001347.2 + 1035 0.68 0.489933
Target:  5'- -aCGCCgggccacggcguccaCCGGGUaGAaccccGCGGGCCGCCg -3'
miRNA:   3'- uaGCGGag-------------GGCUCG-CU-----CGCCCGGCGG- -5'
1720 3' -65 NC_001347.2 + 1989 0.7 0.384509
Target:  5'- -aCGaCgUCCCGccagcGGCGAGCGgcacggagacggaGGCCGCCg -3'
miRNA:   3'- uaGC-GgAGGGC-----UCGCUCGC-------------CCGGCGG- -5'
1720 3' -65 NC_001347.2 + 13508 0.7 0.396076
Target:  5'- -aCGCCgggugcucacccgCCGGGCGGccCGGGCCGCCg -3'
miRNA:   3'- uaGCGGag-----------GGCUCGCUc-GCCCGGCGG- -5'
1720 3' -65 NC_001347.2 + 37593 0.67 0.555737
Target:  5'- gGUCGUCaaCUGuGCuGAGCGGG-CGCCa -3'
miRNA:   3'- -UAGCGGagGGCuCG-CUCGCCCgGCGG- -5'
1720 3' -65 NC_001347.2 + 39803 0.7 0.377677
Target:  5'- -cCGCCUCCCGGGCGcgcacccaucuaGGUGGa-CGCCc -3'
miRNA:   3'- uaGCGGAGGGCUCGC------------UCGCCcgGCGG- -5'
1720 3' -65 NC_001347.2 + 40585 0.66 0.611646
Target:  5'- -gCGCUUgUCGGGgguuuuCGAGCGuucuGGCCGCCg -3'
miRNA:   3'- uaGCGGAgGGCUC------GCUCGC----CCGGCGG- -5'
1720 3' -65 NC_001347.2 + 65869 0.66 0.611646
Target:  5'- cUgGCCUUCgGcacGCuGGCGGGCCGaCCg -3'
miRNA:   3'- uAgCGGAGGgCu--CGcUCGCCCGGC-GG- -5'
1720 3' -65 NC_001347.2 + 78975 0.66 0.602263
Target:  5'- --aGCuCUCCUucGGCGAGauCGuGGCCGCCg -3'
miRNA:   3'- uagCG-GAGGGc-UCGCUC--GC-CCGGCGG- -5'
1720 3' -65 NC_001347.2 + 81723 0.67 0.564973
Target:  5'- cUUGCCggCCGAGCccacgaugucGGGCaGGCCGCa -3'
miRNA:   3'- uAGCGGagGGCUCG----------CUCGcCCGGCGg -5'
1720 3' -65 NC_001347.2 + 82894 1.09 0.000755
Target:  5'- cAUCGCCUCCCGAGCGAGCGGGCCGCCg -3'
miRNA:   3'- -UAGCGGAGGGCUCGCUCGCCCGGCGG- -5'
1720 3' -65 NC_001347.2 + 84378 0.67 0.546545
Target:  5'- -gCGCggagUCCUGGGUGuGuCGGGCCGCg -3'
miRNA:   3'- uaGCGg---AGGGCUCGCuC-GCCCGGCGg -5'
1720 3' -65 NC_001347.2 + 103647 0.66 0.592899
Target:  5'- -gCGCCUCUgGAccacGCGcAGCgucaGGGCCuGCCg -3'
miRNA:   3'- uaGCGGAGGgCU----CGC-UCG----CCCGG-CGG- -5'
1720 3' -65 NC_001347.2 + 115516 0.66 0.611646
Target:  5'- -gUGCCggCCGcGCuAGCGGGCUGCa -3'
miRNA:   3'- uaGCGGagGGCuCGcUCGCCCGGCGg -5'
1720 3' -65 NC_001347.2 + 124880 0.66 0.583559
Target:  5'- -cCGCCUCCCGAGgcaCGucgGGGCUGUg -3'
miRNA:   3'- uaGCGGAGGGCUC---GCucgCCCGGCGg -5'
1720 3' -65 NC_001347.2 + 126441 0.69 0.461382
Target:  5'- -aCGCCUCCaUGGGCGAGuUcgcgcgucugcuacuGGGCuCGCCc -3'
miRNA:   3'- uaGCGGAGG-GCUCGCUC-G---------------CCCG-GCGG- -5'
1720 3' -65 NC_001347.2 + 128829 0.69 0.432912
Target:  5'- cGUCGUuaucUUCCCuGAGCGAGCGcgaacGCCGCg -3'
miRNA:   3'- -UAGCG----GAGGG-CUCGCUCGCc----CGGCGg -5'
1720 3' -65 NC_001347.2 + 132990 0.67 0.574248
Target:  5'- cGUCGUCggUCUCGAGCGccccccgauGUaGGGCCGCUc -3'
miRNA:   3'- -UAGCGG--AGGGCUCGCu--------CG-CCCGGCGG- -5'
1720 3' -65 NC_001347.2 + 136206 0.67 0.537402
Target:  5'- -gCGCCggg-GGGCG-GCGGGCaCGCCg -3'
miRNA:   3'- uaGCGGagggCUCGCuCGCCCG-GCGG- -5'
1720 3' -65 NC_001347.2 + 137530 0.68 0.483807
Target:  5'- -cCGCCUCuuGGGCGGuucuaCGGGCCucGCUu -3'
miRNA:   3'- uaGCGGAGggCUCGCUc----GCCCGG--CGG- -5'
1720 3' -65 NC_001347.2 + 148662 0.66 0.583559
Target:  5'- -gCGCagggCUCGGGCaAGC-GGCCGCCa -3'
miRNA:   3'- uaGCGga--GGGCUCGcUCGcCCGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.